miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 288 0.7 0.445801
Target:  5'- cGGGaagACCCgGGGgcGGGCCCGGCgcgCUCg -3'
miRNA:   3'- -UCCg--UGGGaCCC--UCUGGGCCGaa-GGG- -5'
29149 3' -62.1 NC_006146.1 + 513 0.83 0.068468
Target:  5'- gAGGCcCCCagGGGAGGCCCGGCcUCCa -3'
miRNA:   3'- -UCCGuGGGa-CCCUCUGGGCCGaAGGg -5'
29149 3' -62.1 NC_006146.1 + 583 0.7 0.463313
Target:  5'- gAGGgGCCggGGGcgcGGCCCGGCgccagCCCu -3'
miRNA:   3'- -UCCgUGGgaCCCu--CUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 922 0.67 0.584445
Target:  5'- cGGgACCCcGGGcGcGCgCCGGCcUCCCg -3'
miRNA:   3'- uCCgUGGGaCCCuC-UG-GGCCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 1444 0.83 0.068468
Target:  5'- gAGGCcCCCagGGGAGGCCCGGCcUCCa -3'
miRNA:   3'- -UCCGuGGGa-CCCUCUGGGCCGaAGGg -5'
29149 3' -62.1 NC_006146.1 + 1514 0.7 0.463313
Target:  5'- gAGGgGCCggGGGcgcGGCCCGGCgccagCCCu -3'
miRNA:   3'- -UCCgUGGgaCCCu--CUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 1854 0.67 0.584445
Target:  5'- cGGgACCCcGGGcGcGCgCCGGCcUCCCg -3'
miRNA:   3'- uCCgUGGGaCCCuC-UG-GGCCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 2376 0.83 0.068468
Target:  5'- gAGGCcCCCagGGGAGGCCCGGCcUCCa -3'
miRNA:   3'- -UCCGuGGGa-CCCUCUGGGCCGaAGGg -5'
29149 3' -62.1 NC_006146.1 + 2446 0.7 0.463313
Target:  5'- gAGGgGCCggGGGcgcGGCCCGGCgccagCCCu -3'
miRNA:   3'- -UCCgUGGgaCCCu--CUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 2786 0.67 0.584445
Target:  5'- cGGgACCCcGGGcGcGCgCCGGCcUCCCg -3'
miRNA:   3'- uCCgUGGGaCCCuC-UG-GGCCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 3308 0.83 0.068468
Target:  5'- gAGGCcCCCagGGGAGGCCCGGCcUCCa -3'
miRNA:   3'- -UCCGuGGGa-CCCUCUGGGCCGaAGGg -5'
29149 3' -62.1 NC_006146.1 + 3378 0.7 0.463313
Target:  5'- gAGGgGCCggGGGcgcGGCCCGGCgccagCCCu -3'
miRNA:   3'- -UCCgUGGgaCCCu--CUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 3445 0.71 0.367272
Target:  5'- uGGGCuccacgguCCCgcucggGGGGcuaaacuucgucaacGACCUGGCUUCCCc -3'
miRNA:   3'- -UCCGu-------GGGa-----CCCU---------------CUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 3718 0.67 0.584445
Target:  5'- cGGgACCCcGGGcGcGCgCCGGCcUCCCg -3'
miRNA:   3'- uCCgUGGGaCCCuC-UG-GGCCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 3725 0.68 0.578651
Target:  5'- cAGGguCUCUGGGGGccgcguggcccuucaGCCCGGggugggUCCCc -3'
miRNA:   3'- -UCCguGGGACCCUC---------------UGGGCCga----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 6736 0.67 0.584445
Target:  5'- aAGGUgACCC-GGGuGAUCCGGCagaUCCa -3'
miRNA:   3'- -UCCG-UGGGaCCCuCUGGGCCGa--AGGg -5'
29149 3' -62.1 NC_006146.1 + 7034 0.71 0.379686
Target:  5'- uGGCAUgCUGGaauuGGCCCGGCaaagCCCa -3'
miRNA:   3'- uCCGUGgGACCcu--CUGGGCCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 8043 0.68 0.565184
Target:  5'- uGGCACCCgcu-GGACCCGGC--CCUg -3'
miRNA:   3'- uCCGUGGGacccUCUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 8944 0.69 0.499372
Target:  5'- gGGGCguuGCCCgaaaGGGAaGCCgGGUcUCCCa -3'
miRNA:   3'- -UCCG---UGGGa---CCCUcUGGgCCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 9010 0.67 0.603829
Target:  5'- gGGGCguuGCCCaaaaGGGAaGCCgGGUcUCCCa -3'
miRNA:   3'- -UCCG---UGGGa---CCCUcUGGgCCGaAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.