miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 161941 1.1 0.000786
Target:  5'- uAGGCACCCUGGGAGACCCGGCUUCCCu -3'
miRNA:   3'- -UCCGUGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 168581 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 170444 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 54730 0.66 0.700815
Target:  5'- aGGGCGgCCgagGGGAGACUCaGGUcgCUg -3'
miRNA:   3'- -UCCGUgGGa--CCCUCUGGG-CCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 167309 0.79 0.128484
Target:  5'- cGGCGCCUgcaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGGGa--CCCUCUgGGCCGa-----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 168241 0.79 0.128484
Target:  5'- cGGCGCCUgcaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGGGa--CCCUCUgGGCCGa-----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 65209 0.78 0.13498
Target:  5'- uGGGgGCCCUGGGAGcCCgGGCgUCCa -3'
miRNA:   3'- -UCCgUGGGACCCUCuGGgCCGaAGGg -5'
29149 3' -62.1 NC_006146.1 + 170105 0.77 0.168093
Target:  5'- cGGCGCCgCaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGG-GaCCCUCUgGGCCGa-----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 18618 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 47033 0.74 0.262438
Target:  5'- cGGGCGCCCUGGGugcgagaaGGGgCCGGUcgCCg -3'
miRNA:   3'- -UCCGUGGGACCC--------UCUgGGCCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 24774 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 15540 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 161874 1.03 0.002725
Target:  5'- uAGGCuCCCUGGGAGACCCGGCUUCCCu -3'
miRNA:   3'- -UCCGuGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 27852 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 161807 0.98 0.005865
Target:  5'- uAGGCuCCCUGGGAGACCCGGCUUUCCu -3'
miRNA:   3'- -UCCGuGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 12461 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 89125 0.75 0.234058
Target:  5'- uGGCACCCccGGAGACCgGGCggCCa -3'
miRNA:   3'- uCCGUGGGacCCUCUGGgCCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 169513 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 162008 0.87 0.036864
Target:  5'- uAGGCACCCUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCGUGGGACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 169173 0.79 0.128484
Target:  5'- cGGCGCCUgcaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGGGa--CCCUCUgGGCCGa-----AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.