Results 21 - 40 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29149 | 3' | -62.1 | NC_006146.1 | + | 25752 | 0.66 | 0.681596 |
Target: 5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3' miRNA: 3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 28830 | 0.66 | 0.681596 |
Target: 5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3' miRNA: 3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 85918 | 0.66 | 0.681596 |
Target: 5'- gGGGCuuuACCCUGGG--GCCUGGauggCCUg -3' miRNA: 3'- -UCCG---UGGGACCCucUGGGCCgaa-GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 42717 | 0.66 | 0.681596 |
Target: 5'- cGGCGCCCcccUGGGccgccuCCCGGCgUCgCu -3' miRNA: 3'- uCCGUGGG---ACCCucu---GGGCCGaAGgG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 145690 | 0.66 | 0.681596 |
Target: 5'- cAGGCucaccaccacagACCCcagacccGAGACCCGGCcugCCCa -3' miRNA: 3'- -UCCG------------UGGGacc----CUCUGGGCCGaa-GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 43826 | 0.66 | 0.681596 |
Target: 5'- --cCGCCCUGGcccuUUCGGCUUCCCg -3' miRNA: 3'- uccGUGGGACCcucuGGGCCGAAGGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 43276 | 0.66 | 0.681596 |
Target: 5'- aGGGCGgCCU-GGAGGUCCGGCaggugCCUa -3' miRNA: 3'- -UCCGUgGGAcCCUCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 47749 | 0.66 | 0.681596 |
Target: 5'- gGGGCugGCCCUGGG-GACggagagCGGCcucUUCUCg -3' miRNA: 3'- -UCCG--UGGGACCCuCUGg-----GCCG---AAGGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 91771 | 0.66 | 0.681596 |
Target: 5'- uGGGUG-CCUGGG-GugCCGuGCUggcaCCCg -3' miRNA: 3'- -UCCGUgGGACCCuCugGGC-CGAa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 128189 | 0.66 | 0.681596 |
Target: 5'- gAGGCgGCCCagGGGGGcGCCgCGGCg--CCg -3' miRNA: 3'- -UCCG-UGGGa-CCCUC-UGG-GCCGaagGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 13440 | 0.66 | 0.681596 |
Target: 5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3' miRNA: 3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 35179 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 35365 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 35272 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 34529 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 34622 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 34715 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 34808 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 34993 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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29149 | 3' | -62.1 | NC_006146.1 | + | 35086 | 0.66 | 0.677733 |
Target: 5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3' miRNA: 3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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