miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 25752 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 28830 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 85918 0.66 0.681596
Target:  5'- gGGGCuuuACCCUGGG--GCCUGGauggCCUg -3'
miRNA:   3'- -UCCG---UGGGACCCucUGGGCCgaa-GGG- -5'
29149 3' -62.1 NC_006146.1 + 42717 0.66 0.681596
Target:  5'- cGGCGCCCcccUGGGccgccuCCCGGCgUCgCu -3'
miRNA:   3'- uCCGUGGG---ACCCucu---GGGCCGaAGgG- -5'
29149 3' -62.1 NC_006146.1 + 145690 0.66 0.681596
Target:  5'- cAGGCucaccaccacagACCCcagacccGAGACCCGGCcugCCCa -3'
miRNA:   3'- -UCCG------------UGGGacc----CUCUGGGCCGaa-GGG- -5'
29149 3' -62.1 NC_006146.1 + 43826 0.66 0.681596
Target:  5'- --cCGCCCUGGcccuUUCGGCUUCCCg -3'
miRNA:   3'- uccGUGGGACCcucuGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 43276 0.66 0.681596
Target:  5'- aGGGCGgCCU-GGAGGUCCGGCaggugCCUa -3'
miRNA:   3'- -UCCGUgGGAcCCUCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 47749 0.66 0.681596
Target:  5'- gGGGCugGCCCUGGG-GACggagagCGGCcucUUCUCg -3'
miRNA:   3'- -UCCG--UGGGACCCuCUGg-----GCCG---AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 91771 0.66 0.681596
Target:  5'- uGGGUG-CCUGGG-GugCCGuGCUggcaCCCg -3'
miRNA:   3'- -UCCGUgGGACCCuCugGGC-CGAa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 128189 0.66 0.681596
Target:  5'- gAGGCgGCCCagGGGGGcGCCgCGGCg--CCg -3'
miRNA:   3'- -UCCG-UGGGa-CCCUC-UGG-GCCGaagGG- -5'
29149 3' -62.1 NC_006146.1 + 13440 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 35179 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 35365 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 35272 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 34529 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 34622 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 34715 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 34808 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 34993 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 35086 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.