Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29149 | 5' | -59.5 | NC_006146.1 | + | 150764 | 0.72 | 0.423838 |
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Target: 5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3' miRNA: 3'- cACCCUCUGGCCGAGGugCC-ACCUau -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 36109 | 0.73 | 0.366104 |
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Target: 5'- -aGGGGGACCcGCUgCugGGUGGGg- -3' miRNA: 3'- caCCCUCUGGcCGAgGugCCACCUau -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 162126 | 0.75 | 0.280383 |
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Target: 5'- cUGGGGGGCCGuC-CCACGGUGGGa- -3' miRNA: 3'- cACCCUCUGGCcGaGGUGCCACCUau -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 162047 | 0.79 | 0.173945 |
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Target: 5'- uGUGGGAaACCGGUUCCACcgcgggGGUGGGUGa -3' miRNA: 3'- -CACCCUcUGGCCGAGGUG------CCACCUAU- -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 162016 | 1 | 0.00621 |
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Target: 5'- cUGGGAGACCGGCUCCACGGUGGAg- -3' miRNA: 3'- cACCCUCUGGCCGAGGUGCCACCUau -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 161782 | 1.07 | 0.002099 |
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Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 161916 | 1.07 | 0.002099 |
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Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 161849 | 1.07 | 0.002099 |
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Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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| 29149 | 5' | -59.5 | NC_006146.1 | + | 161983 | 1.07 | 0.002099 |
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Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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