miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2915 3' -55.3 NC_001493.1 + 114136 0.66 0.93923
Target:  5'- cGGGAGCAucuCGGGaGGGUaucGUCCgCg -3'
miRNA:   3'- -CCCUUGUcuuGCCC-CCCAca-UAGGgG- -5'
2915 3' -55.3 NC_001493.1 + 95823 0.66 0.929306
Target:  5'- aGGAACGu--CGucGGGGGUGgcUCCUCc -3'
miRNA:   3'- cCCUUGUcuuGC--CCCCCACauAGGGG- -5'
2915 3' -55.3 NC_001493.1 + 106169 0.66 0.923987
Target:  5'- cGGAgaaGGAACGGuGGGGgcagGUgCCCa -3'
miRNA:   3'- cCCUug-UCUUGCC-CCCCaca-UAgGGG- -5'
2915 3' -55.3 NC_001493.1 + 87714 0.66 0.920681
Target:  5'- cGGGggUAGAuccggcuccucguacGCcgcGGGGGGcagGUCCCg -3'
miRNA:   3'- -CCCuuGUCU---------------UG---CCCCCCacaUAGGGg -5'
2915 3' -55.3 NC_001493.1 + 107810 0.66 0.91843
Target:  5'- -uGAccGCGGAcACGGGGGGUc---CCCCu -3'
miRNA:   3'- ccCU--UGUCU-UGCCCCCCAcauaGGGG- -5'
2915 3' -55.3 NC_001493.1 + 94392 0.66 0.91843
Target:  5'- cGGGggUu---CGGGuguccGGGUaUAUCCCCg -3'
miRNA:   3'- -CCCuuGucuuGCCC-----CCCAcAUAGGGG- -5'
2915 3' -55.3 NC_001493.1 + 120864 0.66 0.912636
Target:  5'- uGGGAugAGGACGuGGcGGG-Ggca-CCCg -3'
miRNA:   3'- -CCCUugUCUUGC-CC-CCCaCauagGGG- -5'
2915 3' -55.3 NC_001493.1 + 5310 0.66 0.912636
Target:  5'- uGGGAugAGGACGuGGcGGG-Ggca-CCCg -3'
miRNA:   3'- -CCCUugUCUUGC-CC-CCCaCauagGGG- -5'
2915 3' -55.3 NC_001493.1 + 95603 0.67 0.900342
Target:  5'- cGGGcGAgAG-ACGGGuGGUGgaccUCCCCg -3'
miRNA:   3'- -CCC-UUgUCuUGCCCcCCACau--AGGGG- -5'
2915 3' -55.3 NC_001493.1 + 62573 0.67 0.893846
Target:  5'- cGGccACGGGcACGGGGGGcgagGUCCaCCg -3'
miRNA:   3'- -CCcuUGUCU-UGCCCCCCaca-UAGG-GG- -5'
2915 3' -55.3 NC_001493.1 + 87666 0.67 0.893184
Target:  5'- uGGAGCcGGcuccucguacgccGCGGGGGGcagGUCCCg -3'
miRNA:   3'- cCCUUGuCU-------------UGCCCCCCacaUAGGGg -5'
2915 3' -55.3 NC_001493.1 + 102720 0.67 0.887123
Target:  5'- aGGAACGGGugGGuuGGUGacggucaagCCCCa -3'
miRNA:   3'- cCCUUGUCUugCCccCCACaua------GGGG- -5'
2915 3' -55.3 NC_001493.1 + 85147 0.67 0.873008
Target:  5'- --uGACA--GCGGGGGGUGa--CCCCu -3'
miRNA:   3'- cccUUGUcuUGCCCCCCACauaGGGG- -5'
2915 3' -55.3 NC_001493.1 + 106723 0.68 0.858034
Target:  5'- aGGGGGCAuucuguGAcGCGGGGGGgacccgggcGUAUUUCCc -3'
miRNA:   3'- -CCCUUGU------CU-UGCCCCCCa--------CAUAGGGG- -5'
2915 3' -55.3 NC_001493.1 + 87798 0.68 0.857264
Target:  5'- gGGGGGCAGGuccCGGGGuagauccGGUccucGUAcgCCCCg -3'
miRNA:   3'- -CCCUUGUCUu--GCCCC-------CCA----CAUa-GGGG- -5'
2915 3' -55.3 NC_001493.1 + 102466 0.68 0.850239
Target:  5'- uGGGGccucgGCGGGuCGGGGGGUcgcgacGgccgGUCCUCu -3'
miRNA:   3'- -CCCU-----UGUCUuGCCCCCCA------Ca---UAGGGG- -5'
2915 3' -55.3 NC_001493.1 + 31940 0.68 0.850239
Target:  5'- uGGAACGcGAuacucaaGGGGGGUGgagaCCCg -3'
miRNA:   3'- cCCUUGU-CUug-----CCCCCCACauagGGG- -5'
2915 3' -55.3 NC_001493.1 + 89541 0.68 0.842247
Target:  5'- uGGaGAGCuucgGGAAgGGGGGGUugGUCCgCa -3'
miRNA:   3'- -CC-CUUG----UCUUgCCCCCCAcaUAGGgG- -5'
2915 3' -55.3 NC_001493.1 + 34357 0.68 0.842247
Target:  5'- gGGGaAGCGGAccgucuacgAgGGGGGGUaUGUCUUCg -3'
miRNA:   3'- -CCC-UUGUCU---------UgCCCCCCAcAUAGGGG- -5'
2915 3' -55.3 NC_001493.1 + 39872 0.69 0.825701
Target:  5'- uGGGAuCGGAuCGGGGGGUuuuucaaCCUCa -3'
miRNA:   3'- -CCCUuGUCUuGCCCCCCAcaua---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.