miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2915 5' -61.7 NC_001493.1 + 31358 0.66 0.647879
Target:  5'- gGUGgGCGCgGgcgguugcaGCGuCCGUUCGAgUCCCg -3'
miRNA:   3'- -CACgCGCGgUg--------CGC-GGCAGGCU-AGGG- -5'
2915 5' -61.7 NC_001493.1 + 32609 0.66 0.647879
Target:  5'- -gGCGUuuacgguccgggGCCAuaucCGCG-CGUgCCGAUCCCg -3'
miRNA:   3'- caCGCG------------CGGU----GCGCgGCA-GGCUAGGG- -5'
2915 5' -61.7 NC_001493.1 + 63124 0.66 0.637037
Target:  5'- -gGUGUGguggucaCCACgGUGCCGUUCGcUCCCg -3'
miRNA:   3'- caCGCGC-------GGUG-CGCGGCAGGCuAGGG- -5'
2915 5' -61.7 NC_001493.1 + 20846 0.66 0.628163
Target:  5'- ---gGCGCgGCGCGgCG-CCGAUCUUg -3'
miRNA:   3'- cacgCGCGgUGCGCgGCaGGCUAGGG- -5'
2915 5' -61.7 NC_001493.1 + 127774 0.66 0.628163
Target:  5'- --uCGCGCCcCGCGuaGUCCcuAUCCCc -3'
miRNA:   3'- cacGCGCGGuGCGCggCAGGc-UAGGG- -5'
2915 5' -61.7 NC_001493.1 + 12220 0.66 0.628163
Target:  5'- --uCGCGCCcCGCGuaGUCCcuAUCCCc -3'
miRNA:   3'- cacGCGCGGuGCGCggCAGGc-UAGGG- -5'
2915 5' -61.7 NC_001493.1 + 95150 0.66 0.618305
Target:  5'- aUGCGC-CCACGgaaucugcCGCCGcUCguaGAUCCCc -3'
miRNA:   3'- cACGCGcGGUGC--------GCGGC-AGg--CUAGGG- -5'
2915 5' -61.7 NC_001493.1 + 87173 0.67 0.608458
Target:  5'- -cGCaGCGCCAC-CGUCGggUCCGGUCg- -3'
miRNA:   3'- caCG-CGCGGUGcGCGGC--AGGCUAGgg -5'
2915 5' -61.7 NC_001493.1 + 74379 0.67 0.598627
Target:  5'- uUGCGcCGCCAuCGUGCCGaacacgaagaggUCCaGUCCa -3'
miRNA:   3'- cACGC-GCGGU-GCGCGGC------------AGGcUAGGg -5'
2915 5' -61.7 NC_001493.1 + 59891 0.67 0.598627
Target:  5'- --aUGCGCCGcCGUGCuCGUCaCcGUCCCa -3'
miRNA:   3'- cacGCGCGGU-GCGCG-GCAG-GcUAGGG- -5'
2915 5' -61.7 NC_001493.1 + 94711 0.67 0.588818
Target:  5'- gGUGgGUGCCACGggggcgaugGCCGugUCCGAcgCCCc -3'
miRNA:   3'- -CACgCGCGGUGCg--------CGGC--AGGCUa-GGG- -5'
2915 5' -61.7 NC_001493.1 + 81412 0.67 0.588818
Target:  5'- cGUGCGacCGCUcaggugguugAUGUGCCGUgUGAUCUCa -3'
miRNA:   3'- -CACGC--GCGG----------UGCGCGGCAgGCUAGGG- -5'
2915 5' -61.7 NC_001493.1 + 13402 0.67 0.579039
Target:  5'- cGUGUGCGgC-CGCGCgGUCgUGGggCCCa -3'
miRNA:   3'- -CACGCGCgGuGCGCGgCAG-GCUa-GGG- -5'
2915 5' -61.7 NC_001493.1 + 128956 0.67 0.579039
Target:  5'- cGUGUGCGgC-CGCGCgGUCgUGGggCCCa -3'
miRNA:   3'- -CACGCGCgGuGCGCGgCAG-GCUa-GGG- -5'
2915 5' -61.7 NC_001493.1 + 35633 0.67 0.572215
Target:  5'- -gGCGCGUCccggguuucuuggacGCGCGCagcugugCGUCCGuAUCCUc -3'
miRNA:   3'- caCGCGCGG---------------UGCGCG-------GCAGGC-UAGGG- -5'
2915 5' -61.7 NC_001493.1 + 9962 0.67 0.569295
Target:  5'- --aUGCGCC-CGCGCCGagcUCGAcgUCCCc -3'
miRNA:   3'- cacGCGCGGuGCGCGGCa--GGCU--AGGG- -5'
2915 5' -61.7 NC_001493.1 + 62457 0.67 0.569295
Target:  5'- cGUGCccGUGCC-CGUGCCcguggCCGGcUCCCg -3'
miRNA:   3'- -CACG--CGCGGuGCGCGGca---GGCU-AGGG- -5'
2915 5' -61.7 NC_001493.1 + 39649 0.67 0.569295
Target:  5'- -gGCGUGaCGCGggugaCGCUGacgCCGAUCCCg -3'
miRNA:   3'- caCGCGCgGUGC-----GCGGCa--GGCUAGGG- -5'
2915 5' -61.7 NC_001493.1 + 125516 0.67 0.569295
Target:  5'- --aUGCGCC-CGCGCCGagcUCGAcgUCCCc -3'
miRNA:   3'- cacGCGCGGuGCGCGGCa--GGCU--AGGG- -5'
2915 5' -61.7 NC_001493.1 + 13094 0.67 0.559593
Target:  5'- -aGCGC-CCGCGCGaauaccucauccUCGUCCucccggGGUCCCg -3'
miRNA:   3'- caCGCGcGGUGCGC------------GGCAGG------CUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.