miRNA display CGI


Results 41 - 60 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 101255 0.66 0.93811
Target:  5'- gAGGAGGACCGcGgGCCcauuAGCcGcCCCCa -3'
miRNA:   3'- -UUCUCCUGGC-CaUGGu---UUGcCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 120927 0.66 0.922811
Target:  5'- --uGGcGGCCGGU-CCAAaaccGCGGGCCUUg -3'
miRNA:   3'- uucUC-CUGGCCAuGGUU----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 115936 0.66 0.922811
Target:  5'- -cGGGGGCagCGGUAgCGgcGGCGGcggucGCCCCg -3'
miRNA:   3'- uuCUCCUG--GCCAUgGU--UUGCC-----UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 27839 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 28839 0.66 0.928146
Target:  5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3'
miRNA:   3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 21683 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 22597 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 60483 0.66 0.916672
Target:  5'- uGAGAGG-CCGGgggGCCAgcucccccGACGGcgaggguGCuCCCa -3'
miRNA:   3'- -UUCUCCuGGCCa--UGGU--------UUGCC-------UG-GGG- -5'
29151 3' -55.8 NC_006146.1 + 56413 0.66 0.917242
Target:  5'- --cGGGACCGGgaGCCuAAGCGucauGCCCCc -3'
miRNA:   3'- uucUCCUGGCCa-UGG-UUUGCc---UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 580 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 1511 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 52636 0.66 0.922811
Target:  5'- ---uGGACCGG-GCCGAgaacAUGGGCUCUg -3'
miRNA:   3'- uucuCCUGGCCaUGGUU----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 2443 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 3375 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 94217 0.67 0.905403
Target:  5'- --aAGGuGCCGGUguaGCCGcaGACGGACUUCu -3'
miRNA:   3'- uucUCC-UGGCCA---UGGU--UUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 53497 0.67 0.905403
Target:  5'- cGGGGGugCGGUcugGCUcuggcuGCGGGCCgCg -3'
miRNA:   3'- uUCUCCugGCCA---UGGuu----UGCCUGGgG- -5'
29151 3' -55.8 NC_006146.1 + 27556 0.67 0.905403
Target:  5'- gAAGAGGACgGGccGgUAAGCGGuCCaCCa -3'
miRNA:   3'- -UUCUCCUGgCCa-UgGUUUGCCuGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 44828 0.67 0.885927
Target:  5'- uAGGGGGCCGGcGCCccuCGuGCCCg -3'
miRNA:   3'- uUCUCCUGGCCaUGGuuuGCcUGGGg -5'
29151 3' -55.8 NC_006146.1 + 21400 0.67 0.905403
Target:  5'- gAAGAGGACgGGccGgUAAGCGGuCCaCCa -3'
miRNA:   3'- -UUCUCCUGgCCa-UgGUUUGCCuGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 113622 0.67 0.885927
Target:  5'- uGGGGGACCGucaGCUuGACGGugCuCCg -3'
miRNA:   3'- uUCUCCUGGCca-UGGuUUGCCugG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.