miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 94695 0.66 0.99801
Target:  5'- gGGGGUUCuuGGGGUGGGccUGcCAUGg -3'
miRNA:   3'- -CCCUAGGuuUCUCAUCCcuAC-GUACg -5'
29153 3' -49.7 NC_006146.1 + 84718 0.68 0.989205
Target:  5'- aGGGAcUgGAGGAGgagcucauUAGGGAUG-AUGCa -3'
miRNA:   3'- -CCCUaGgUUUCUC--------AUCCCUACgUACG- -5'
29153 3' -49.7 NC_006146.1 + 81655 0.68 0.99175
Target:  5'- uGGGGcUCGGAGGGUgccGGGGAaGCG-GCg -3'
miRNA:   3'- -CCCUaGGUUUCUCA---UCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 81396 0.67 0.99718
Target:  5'- uGGGccaaagCCAAAGAGcuuuuGGGAaaUGCggGCa -3'
miRNA:   3'- -CCCua----GGUUUCUCau---CCCU--ACGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 78574 0.67 0.994653
Target:  5'- cGGGugcuguUCUGAgccAGGGgagAGGGGUGC-UGCg -3'
miRNA:   3'- -CCCu-----AGGUU---UCUCa--UCCCUACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 71456 0.68 0.990545
Target:  5'- uGGcgCCGAGGAGcgAGGGccuCAUGCu -3'
miRNA:   3'- cCCuaGGUUUCUCa-UCCCuacGUACG- -5'
29153 3' -49.7 NC_006146.1 + 67362 0.72 0.937062
Target:  5'- cGGGGUCCGGgucccacgaguacGGGG-AGGGggGCucgGUGCg -3'
miRNA:   3'- -CCCUAGGUU-------------UCUCaUCCCuaCG---UACG- -5'
29153 3' -49.7 NC_006146.1 + 66719 0.71 0.955521
Target:  5'- gGGGAgcacgucuUCCAuguucucGGAGUcAGGGGguggGCAUGCc -3'
miRNA:   3'- -CCCU--------AGGUu------UCUCA-UCCCUa---CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 60127 0.71 0.951406
Target:  5'- aGGGGcCgGGGGAGggaccuggugGGGGGUGUGUGCc -3'
miRNA:   3'- -CCCUaGgUUUCUCa---------UCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 59537 0.66 0.997625
Target:  5'- ---cUCCA---GGUGGGGGUGCAgcgugGCg -3'
miRNA:   3'- cccuAGGUuucUCAUCCCUACGUa----CG- -5'
29153 3' -49.7 NC_006146.1 + 53438 0.68 0.99175
Target:  5'- aGGAUCCGAAaGGgcGGuGGUGUcUGCc -3'
miRNA:   3'- cCCUAGGUUUcUCauCC-CUACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 52075 0.69 0.985914
Target:  5'- aGGAUgCCAGGGAGgcGGGcaucaaguucgagGUGC-UGCu -3'
miRNA:   3'- cCCUA-GGUUUCUCauCCC-------------UACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 51554 0.68 0.993795
Target:  5'- gGGGAUUacuggaGAuGGGUGGGGAgGCG-GCg -3'
miRNA:   3'- -CCCUAGg-----UUuCUCAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 47702 0.69 0.986086
Target:  5'- uGGGcgUgGAAGAgGUGGGGA-GCA-GCg -3'
miRNA:   3'- -CCCuaGgUUUCU-CAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 42542 0.67 0.995412
Target:  5'- uGGGAagcagaCGGGGGGUGGGGggGCGcUGa -3'
miRNA:   3'- -CCCUag----GUUUCUCAUCCCuaCGU-ACg -5'
29153 3' -49.7 NC_006146.1 + 41116 0.72 0.921425
Target:  5'- aGGGccUCCAcuuuAGGGUcccgGGGGAgggGCGUGCg -3'
miRNA:   3'- -CCCu-AGGUu---UCUCA----UCCCUa--CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 41080 0.74 0.859448
Target:  5'- aGGGAggCCAGGGAcagcGaGGGGAgccagGCGUGCa -3'
miRNA:   3'- -CCCUa-GGUUUCU----CaUCCCUa----CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 40262 0.77 0.740418
Target:  5'- uGGGAUCCGu--AGUAGGGAggcGCggGCg -3'
miRNA:   3'- -CCCUAGGUuucUCAUCCCUa--CGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 37773 0.67 0.996667
Target:  5'- aGGGAggugCCuuGGAGcAGaaGAUGCAUGUu -3'
miRNA:   3'- -CCCUa---GGuuUCUCaUCc-CUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 33240 0.66 0.998571
Target:  5'- uGGGGUUCcGGGGGUGGGGGcuccacgaacccGCuUGCc -3'
miRNA:   3'- -CCCUAGGuUUCUCAUCCCUa-----------CGuACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.