Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29153 | 3' | -49.7 | NC_006146.1 | + | 67362 | 0.72 | 0.937062 |
Target: 5'- cGGGGUCCGGgucccacgaguacGGGG-AGGGggGCucgGUGCg -3' miRNA: 3'- -CCCUAGGUU-------------UCUCaUCCCuaCG---UACG- -5' |
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29153 | 3' | -49.7 | NC_006146.1 | + | 60127 | 0.71 | 0.951406 |
Target: 5'- aGGGGcCgGGGGAGggaccuggugGGGGGUGUGUGCc -3' miRNA: 3'- -CCCUaGgUUUCUCa---------UCCCUACGUACG- -5' |
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29153 | 3' | -49.7 | NC_006146.1 | + | 66719 | 0.71 | 0.955521 |
Target: 5'- gGGGAgcacgucuUCCAuguucucGGAGUcAGGGGguggGCAUGCc -3' miRNA: 3'- -CCCU--------AGGUu------UCUCA-UCCCUa---CGUACG- -5' |
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29153 | 3' | -49.7 | NC_006146.1 | + | 167264 | 0.7 | 0.975296 |
Target: 5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3' miRNA: 3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5' |
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29153 | 3' | -49.7 | NC_006146.1 | + | 168196 | 0.7 | 0.975296 |
Target: 5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3' miRNA: 3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5' |
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29153 | 3' | -49.7 | NC_006146.1 | + | 169128 | 0.7 | 0.975296 |
Target: 5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3' miRNA: 3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5' |
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29153 | 3' | -49.7 | NC_006146.1 | + | 170060 | 0.7 | 0.975296 |
Target: 5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3' miRNA: 3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5' |
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29153 | 3' | -49.7 | NC_006146.1 | + | 165994 | 1.16 | 0.004586 |
Target: 5'- aGGGAUCCAAAGAGUAGGGAUGCAUGCg -3' miRNA: 3'- -CCCUAGGUUUCUCAUCCCUACGUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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