miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 5' -55.6 NC_006146.1 + 64222 0.66 0.921036
Target:  5'- gCAGGAGGcacaucUGcGC-CUGgGCCGGGGCg -3'
miRNA:   3'- gGUCUUUC------ACcCGuGACaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 168437 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 170300 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 169369 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 4918 0.66 0.915358
Target:  5'- gCCGGAcccucgcugucGGGUGGccguGCuCUGUGCCccggggaccaGGGGCc -3'
miRNA:   3'- -GGUCU-----------UUCACC----CGuGACACGG----------UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 167505 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 127052 0.66 0.913609
Target:  5'- aCCAGAggcccucGAGcugGcGGCGCgGgaagccgaaaggGCCAGGGCg -3'
miRNA:   3'- -GGUCU-------UUCa--C-CCGUGaCa-----------CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 33378 0.67 0.911838
Target:  5'- gCCGGGccgcugccccgcuccGGGUGGGgGgUGgcccGCCuGGGCa -3'
miRNA:   3'- -GGUCU---------------UUCACCCgUgACa---CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 41744 0.67 0.910046
Target:  5'- aCCGGGcccugagacGGGUGGGCuucccgccggaggccCUGcGCCcGGGCg -3'
miRNA:   3'- -GGUCU---------UUCACCCGu--------------GACaCGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 156603 0.67 0.909444
Target:  5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3'
miRNA:   3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 153525 0.67 0.909444
Target:  5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3'
miRNA:   3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 157747 0.67 0.909444
Target:  5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3'
miRNA:   3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 151592 0.67 0.909444
Target:  5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3'
miRNA:   3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 10627 0.67 0.909444
Target:  5'- gCAGuuuucgcuAGUGGGguUUacccgGCCAGGGCu -3'
miRNA:   3'- gGUCuu------UCACCCguGAca---CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 150447 0.67 0.909444
Target:  5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3'
miRNA:   3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 148514 0.67 0.909444
Target:  5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3'
miRNA:   3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 145436 0.67 0.909444
Target:  5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3'
miRNA:   3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 144291 0.67 0.909444
Target:  5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3'
miRNA:   3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 142358 0.67 0.909444
Target:  5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3'
miRNA:   3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 141213 0.67 0.909444
Target:  5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3'
miRNA:   3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.