Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29157 | 3' | -56.6 | NC_006146.1 | + | 118429 | 0.71 | 0.663643 |
Target: 5'- uUCACgCUcaggaccGUGuUGAUGAGGCCCCUCUc -3' miRNA: 3'- -AGUGgGAa------CGC-ACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 63925 | 0.71 | 0.663643 |
Target: 5'- gCACCCUUGUGccuacugggguUGAauucuAGCCCCUCUc -3' miRNA: 3'- aGUGGGAACGC-----------ACUgcu--UCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 52971 | 0.7 | 0.700792 |
Target: 5'- -gGCCCUccGCGgGGCGGggcgggcgucucgaGGCCCCUCUu -3' miRNA: 3'- agUGGGAa-CGCaCUGCU--------------UCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 55251 | 0.69 | 0.771374 |
Target: 5'- gUCGCCCggGCGgcccgGGCGAAGCggCUCg -3' miRNA: 3'- -AGUGGGaaCGCa----CUGCUUCGggGAGa -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 160105 | 0.68 | 0.824684 |
Target: 5'- -uGCCCa-GCGUGGCGAccUCCCUCa -3' miRNA: 3'- agUGGGaaCGCACUGCUucGGGGAGa -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 41994 | 0.68 | 0.833014 |
Target: 5'- -gACCCgcacagcUGCGUGACGuugccGAGCuacuCCCUCUg -3' miRNA: 3'- agUGGGa------ACGCACUGC-----UUCG----GGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 130008 | 0.68 | 0.833014 |
Target: 5'- cCGCCCggaucGCa-GACGAGGCCCCg-- -3' miRNA: 3'- aGUGGGaa---CGcaCUGCUUCGGGGaga -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 170902 | 0.96 | 0.020341 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCC--- -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGaga -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 170870 | 0.97 | 0.018741 |
Target: 5'- aUCACCCUUGCGUaACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCAcUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 168011 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 168043 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 168911 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 168943 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 168975 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 169843 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 169875 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 169907 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 170774 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 170838 | 1.08 | 0.003417 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' |
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29157 | 3' | -56.6 | NC_006146.1 | + | 170806 | 1.06 | 0.004754 |
Target: 5'- aUCACCCUUGCGUGACGAAGCCCCUCc -3' miRNA: 3'- -AGUGGGAACGCACUGCUUCGGGGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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