Results 21 - 40 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29157 | 5' | -55.6 | NC_006146.1 | + | 149943 | 0.69 | 0.810041 |
Target: 5'- cUCGGGguuGAG-GGGCGCccaggcguugggagUGgggGCCAGGGCc -3' miRNA: 3'- -GGUCU---UUCaCCCGUG--------------ACa--CGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 52326 | 0.7 | 0.738571 |
Target: 5'- cCCuGAc-GUGGGC-CgggGUGcCCGGGGCg -3' miRNA: 3'- -GGuCUuuCACCCGuGa--CAC-GGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 149828 | 0.72 | 0.638207 |
Target: 5'- uCCGGGugguGUGGGCg----GCCAGGGCc -3' miRNA: 3'- -GGUCUuu--CACCCGugacaCGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 167147 | 1.06 | 0.005518 |
Target: 5'- gUAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- gGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 61803 | 0.68 | 0.861657 |
Target: 5'- aCAG-AAGUGGGCGC---GCCGGcacGGCa -3' miRNA: 3'- gGUCuUUCACCCGUGacaCGGUC---CCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 64321 | 0.68 | 0.846076 |
Target: 5'- gUCAGGAGG-GaGCucaaUGUGCCGGGGUu -3' miRNA: 3'- -GGUCUUUCaCcCGug--ACACGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 166493 | 0.71 | 0.722898 |
Target: 5'- gCUAGAAucgcagcguggugccAGUcGGGCgGCUGUGCCaAGcGGCa -3' miRNA: 3'- -GGUCUU---------------UCA-CCCG-UGACACGG-UC-CCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 169942 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 94130 | 0.68 | 0.841249 |
Target: 5'- gCCAGGAAGcuguagacguacucGGGCuGCUcGUGCCcguGGGCc -3' miRNA: 3'- -GGUCUUUCa-------------CCCG-UGA-CACGGu--CCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 169010 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 147088 | 0.71 | 0.727819 |
Target: 5'- gCCAGGgagagagAAGUGGGCGa---GCUGGGGCu -3' miRNA: 3'- -GGUCU-------UUCACCCGUgacaCGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 9690 | 0.69 | 0.821277 |
Target: 5'- gUCAGcuuuGAAGUGgGGCACgggGUGCCAGuuGCc -3' miRNA: 3'- -GGUC----UUUCAC-CCGUGa--CACGGUCc-CG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 41599 | 0.71 | 0.688979 |
Target: 5'- gCGGAGAGgcccgGGGgGCUGguccgcuggGCCcGGGCg -3' miRNA: 3'- gGUCUUUCa----CCCgUGACa--------CGGuCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 131472 | 0.72 | 0.638207 |
Target: 5'- cCCAGugcacccAGGUGGGUcugggGUGCCAGGGa -3' miRNA: 3'- -GGUCu------UUCACCCGuga--CACGGUCCCg -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 79099 | 0.73 | 0.567122 |
Target: 5'- cCCAGAAAGcUGGGUuucguaaggcccGCggGUGCCAGcacGGCa -3' miRNA: 3'- -GGUCUUUC-ACCCG------------UGa-CACGGUC---CCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 95518 | 0.74 | 0.516582 |
Target: 5'- uCCGGGAgcugucgGGUGcGGCGcCUG-GCCAGGGUc -3' miRNA: 3'- -GGUCUU-------UCAC-CCGU-GACaCGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 168556 | 0.67 | 0.886232 |
Target: 5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3' miRNA: 3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 45026 | 0.67 | 0.883471 |
Target: 5'- cCCucGAGAGUGaGGgAgaGagGCCGGGGCc -3' miRNA: 3'- -GGu-CUUUCAC-CCgUgaCa-CGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 169704 | 0.68 | 0.857067 |
Target: 5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3' miRNA: 3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 66138 | 0.68 | 0.846076 |
Target: 5'- -gGGAAuuuGUccucGGGCacaGCUGuUGCCAGGGUg -3' miRNA: 3'- ggUCUUu--CA----CCCG---UGAC-ACGGUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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