Results 41 - 60 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29157 | 5' | -55.6 | NC_006146.1 | + | 64222 | 0.66 | 0.921036 |
Target: 5'- gCAGGAGGcacaucUGcGC-CUGgGCCGGGGCg -3' miRNA: 3'- gGUCUUUC------ACcCGuGACaCGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 168437 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 170300 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 169369 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 4918 | 0.66 | 0.915358 |
Target: 5'- gCCGGAcccucgcugucGGGUGGccguGCuCUGUGCCccggggaccaGGGGCc -3' miRNA: 3'- -GGUCU-----------UUCACC----CGuGACACGG----------UCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 167505 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 127052 | 0.66 | 0.913609 |
Target: 5'- aCCAGAggcccucGAGcugGcGGCGCgGgaagccgaaaggGCCAGGGCg -3' miRNA: 3'- -GGUCU-------UUCa--C-CCGUGaCa-----------CGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 33378 | 0.67 | 0.911838 |
Target: 5'- gCCGGGccgcugccccgcuccGGGUGGGgGgUGgcccGCCuGGGCa -3' miRNA: 3'- -GGUCU---------------UUCACCCgUgACa---CGGuCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 41744 | 0.67 | 0.910046 |
Target: 5'- aCCGGGcccugagacGGGUGGGCuucccgccggaggccCUGcGCCcGGGCg -3' miRNA: 3'- -GGUCU---------UUCACCCGu--------------GACaCGGuCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 156603 | 0.67 | 0.909444 |
Target: 5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3' miRNA: 3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 153525 | 0.67 | 0.909444 |
Target: 5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3' miRNA: 3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 157747 | 0.67 | 0.909444 |
Target: 5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3' miRNA: 3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 151592 | 0.67 | 0.909444 |
Target: 5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3' miRNA: 3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 10627 | 0.67 | 0.909444 |
Target: 5'- gCAGuuuucgcuAGUGGGguUUacccgGCCAGGGCu -3' miRNA: 3'- gGUCuu------UCACCCguGAca---CGGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 150447 | 0.67 | 0.909444 |
Target: 5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3' miRNA: 3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 148514 | 0.67 | 0.909444 |
Target: 5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3' miRNA: 3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 145436 | 0.67 | 0.909444 |
Target: 5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3' miRNA: 3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 144291 | 0.67 | 0.909444 |
Target: 5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3' miRNA: 3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 142358 | 0.67 | 0.909444 |
Target: 5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3' miRNA: 3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5' |
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29157 | 5' | -55.6 | NC_006146.1 | + | 141213 | 0.67 | 0.909444 |
Target: 5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3' miRNA: 3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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