miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2916 3' -58.4 NC_001493.1 + 5546 0.66 0.826812
Target:  5'- gUGGGgcucCCGgacuuggGCGGGAggagCGaGCCGCGg -3'
miRNA:   3'- -ACCCa---GGCaga----UGCUCUa---GC-CGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 121101 0.66 0.826812
Target:  5'- gUGGGgcucCCGgacuuggGCGGGAggagCGaGCCGCGg -3'
miRNA:   3'- -ACCCa---GGCaga----UGCUCUa---GC-CGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 34275 0.66 0.818437
Target:  5'- gUGGGUCCGccagCUGCcGGuUCGGUgCGCu -3'
miRNA:   3'- -ACCCAGGCa---GAUGcUCuAGCCG-GCGc -5'
2916 3' -58.4 NC_001493.1 + 3016 0.66 0.809899
Target:  5'- cGGGaUgGUggAUGGGA-CGGCCGCGg -3'
miRNA:   3'- aCCCaGgCAgaUGCUCUaGCCGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 118571 0.66 0.809899
Target:  5'- cGGGaUgGUggAUGGGA-CGGCCGCGg -3'
miRNA:   3'- aCCCaGgCAgaUGCUCUaGCCGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 62340 0.66 0.801206
Target:  5'- gUGGGUUC-UCcgGCGGGggCGGuuGCa -3'
miRNA:   3'- -ACCCAGGcAGa-UGCUCuaGCCggCGc -5'
2916 3' -58.4 NC_001493.1 + 46339 0.66 0.800328
Target:  5'- gUGGGaCCGUCUuccCGAauuuugcGAUgGGCUGCa -3'
miRNA:   3'- -ACCCaGGCAGAu--GCU-------CUAgCCGGCGc -5'
2916 3' -58.4 NC_001493.1 + 98236 0.66 0.783386
Target:  5'- aUGGGgccaUGUgaGCGAGAcacaucUCGGUCGCGc -3'
miRNA:   3'- -ACCCag--GCAgaUGCUCU------AGCCGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 31361 0.67 0.774275
Target:  5'- --aGUCCGUC-AC-AGAccgCGGCCGCGg -3'
miRNA:   3'- accCAGGCAGaUGcUCUa--GCCGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 18623 0.67 0.774275
Target:  5'- cGGGccCCGagUACGA---CGGCCGCGu -3'
miRNA:   3'- aCCCa-GGCagAUGCUcuaGCCGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 92981 0.67 0.765042
Target:  5'- cGGGgacgCCGUCgggugggGCGAGcUCGaCCGUGa -3'
miRNA:   3'- aCCCa---GGCAGa------UGCUCuAGCcGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 36842 0.67 0.736696
Target:  5'- cGGGUaCCGagUACGGGAugccaUCGgGCCGUu -3'
miRNA:   3'- aCCCA-GGCagAUGCUCU-----AGC-CGGCGc -5'
2916 3' -58.4 NC_001493.1 + 128396 0.67 0.733814
Target:  5'- cGGGUCgCGUC--CGGGGUCGGggcgcucgggauacUCGCGg -3'
miRNA:   3'- aCCCAG-GCAGauGCUCUAGCC--------------GGCGC- -5'
2916 3' -58.4 NC_001493.1 + 12842 0.67 0.733814
Target:  5'- cGGGUCgCGUC--CGGGGUCGGggcgcucgggauacUCGCGg -3'
miRNA:   3'- aCCCAG-GCAGauGCUCUAGCC--------------GGCGC- -5'
2916 3' -58.4 NC_001493.1 + 103577 0.69 0.617733
Target:  5'- cGGGUCCGU--GgGGGGUCGGaaCGCGc -3'
miRNA:   3'- aCCCAGGCAgaUgCUCUAGCCg-GCGC- -5'
2916 3' -58.4 NC_001493.1 + 32798 0.7 0.587702
Target:  5'- aGGGuagUCCG-CgacCGGGAUCGGCaCGCGc -3'
miRNA:   3'- aCCC---AGGCaGau-GCUCUAGCCG-GCGC- -5'
2916 3' -58.4 NC_001493.1 + 85252 0.71 0.518993
Target:  5'- gUGGGgauaaCGUCcGCGAG-UUGGCCGUGa -3'
miRNA:   3'- -ACCCag---GCAGaUGCUCuAGCCGGCGC- -5'
2916 3' -58.4 NC_001493.1 + 43632 1.08 0.002179
Target:  5'- cUGGGUCCGUCUACGAGAUCGGCCGCGc -3'
miRNA:   3'- -ACCCAGGCAGAUGCUCUAGCCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.