miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2916 5' -57.2 NC_001493.1 + 62490 0.66 0.879089
Target:  5'- cCCCgCCGGAGAacCCACuGAUagCCCc- -3'
miRNA:   3'- -GGG-GGCCUCUa-GGUGuCUGaaGGGcu -5'
2916 5' -57.2 NC_001493.1 + 107219 0.66 0.879089
Target:  5'- gCCCCGGcGGUCgACcugaGGGCggcCCCGGu -3'
miRNA:   3'- gGGGGCCuCUAGgUG----UCUGaa-GGGCU- -5'
2916 5' -57.2 NC_001493.1 + 50488 0.66 0.879089
Target:  5'- cUCCCCGGAGAcCCGagaAGGag-CCCa- -3'
miRNA:   3'- -GGGGGCCUCUaGGUg--UCUgaaGGGcu -5'
2916 5' -57.2 NC_001493.1 + 9129 0.66 0.876977
Target:  5'- aCCCCGuGGGAUCCguguacgACAGuucgagauaguuCUUCCCa- -3'
miRNA:   3'- gGGGGC-CUCUAGG-------UGUCu-----------GAAGGGcu -5'
2916 5' -57.2 NC_001493.1 + 124683 0.66 0.876977
Target:  5'- aCCCCGuGGGAUCCguguacgACAGuucgagauaguuCUUCCCa- -3'
miRNA:   3'- gGGGGC-CUCUAGG-------UGUCu-----------GAAGGGcu -5'
2916 5' -57.2 NC_001493.1 + 23833 0.66 0.876269
Target:  5'- cCCgCCCGG-GAUCC-CAGugguccaauuaucUUUCCCGAu -3'
miRNA:   3'- -GG-GGGCCuCUAGGuGUCu------------GAAGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 112689 0.66 0.874846
Target:  5'- uCCCCgauggccuggaggaaCGGGcGAUCCcgGGGCUUCUCGAu -3'
miRNA:   3'- -GGGG---------------GCCU-CUAGGugUCUGAAGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 50632 0.66 0.874846
Target:  5'- gUCUCCGGGGAggUCCGCGGuccccuucaacgaccACUggCCGAu -3'
miRNA:   3'- -GGGGGCCUCU--AGGUGUC---------------UGAagGGCU- -5'
2916 5' -57.2 NC_001493.1 + 47974 0.66 0.871974
Target:  5'- -aCCCGuGAuGAaCCguGCGGACUUCCUGGg -3'
miRNA:   3'- ggGGGC-CU-CUaGG--UGUCUGAAGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 87373 0.66 0.871974
Target:  5'- cCCCCCGaGuGAUUCGaucGGCUcgCCCGGu -3'
miRNA:   3'- -GGGGGC-CuCUAGGUgu-CUGAa-GGGCU- -5'
2916 5' -57.2 NC_001493.1 + 22158 0.66 0.871974
Target:  5'- gCCUCCGGAua-CCAUAGGCUcUCUGAc -3'
miRNA:   3'- -GGGGGCCUcuaGGUGUCUGAaGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 130460 0.66 0.863907
Target:  5'- gCCCCGGAGGga-GCGGugcggguGCgggCCCGAg -3'
miRNA:   3'- gGGGGCCUCUaggUGUC-------UGaa-GGGCU- -5'
2916 5' -57.2 NC_001493.1 + 14906 0.66 0.863907
Target:  5'- gCCCCGGAGGga-GCGGugcggguGCgggCCCGAg -3'
miRNA:   3'- gGGGGCCUCUaggUGUC-------UGaa-GGGCU- -5'
2916 5' -57.2 NC_001493.1 + 18922 0.66 0.857124
Target:  5'- uCUCCCGGGGGuuggUCCuCAGGCa-CCCGc -3'
miRNA:   3'- -GGGGGCCUCU----AGGuGUCUGaaGGGCu -5'
2916 5' -57.2 NC_001493.1 + 94973 0.66 0.857124
Target:  5'- uCCgCCCGGGGAUCUACGagcGGCggcagaUUCCGu -3'
miRNA:   3'- -GG-GGGCCUCUAGGUGU---CUGa-----AGGGCu -5'
2916 5' -57.2 NC_001493.1 + 87793 0.66 0.857124
Target:  5'- gCCCCGGGGG---GCAGG--UCCCGGg -3'
miRNA:   3'- gGGGGCCUCUaggUGUCUgaAGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 19914 0.66 0.857124
Target:  5'- gCCCgaaGGAGAggugauUCCGCcucguGGGCUUCUCGGg -3'
miRNA:   3'- gGGGg--CCUCU------AGGUG-----UCUGAAGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 114699 0.66 0.849398
Target:  5'- uCCCCUGGGug-CCGCGGACcaUCUGAa -3'
miRNA:   3'- -GGGGGCCUcuaGGUGUCUGaaGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 43781 0.67 0.83338
Target:  5'- aCUCCaGGAuaaacGAUCuCACGGACcaaUCCCGAa -3'
miRNA:   3'- gGGGG-CCU-----CUAG-GUGUCUGa--AGGGCU- -5'
2916 5' -57.2 NC_001493.1 + 8108 0.67 0.83338
Target:  5'- uCCCCCGaGAGAgaggacCCGgAGAg--CCCGAc -3'
miRNA:   3'- -GGGGGC-CUCUa-----GGUgUCUgaaGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.