miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29163 5' -54.7 NC_006150.1 + 148648 0.66 0.981034
Target:  5'- uCCCgGUAGcGACGGUGCGUu------ -3'
miRNA:   3'- -GGGgCGUCuCUGCCGCGCAcaaaacu -5'
29163 5' -54.7 NC_006150.1 + 133614 0.66 0.97891
Target:  5'- gCCCCGCAGGGgaauGCGGaGCGUu------ -3'
miRNA:   3'- -GGGGCGUCUC----UGCCgCGCAcaaaacu -5'
29163 5' -54.7 NC_006150.1 + 136758 0.67 0.965588
Target:  5'- uUCCCGaggauGAG-UGGCGCGUGUUcggcgGAg -3'
miRNA:   3'- -GGGGCgu---CUCuGCCGCGCACAAaa---CU- -5'
29163 5' -54.7 NC_006150.1 + 101924 0.67 0.958884
Target:  5'- gCCCGagcgAGAGAgGGCuGCGUGgcUUGc -3'
miRNA:   3'- gGGGCg---UCUCUgCCG-CGCACaaAACu -5'
29163 5' -54.7 NC_006150.1 + 106959 0.67 0.958884
Target:  5'- cUCCCGCcGAGuCGGuCGCGUGc----- -3'
miRNA:   3'- -GGGGCGuCUCuGCC-GCGCACaaaacu -5'
29163 5' -54.7 NC_006150.1 + 70905 0.67 0.955217
Target:  5'- aCCUgGCGGAGGCGGaggagGUGUGggcggUGGa -3'
miRNA:   3'- -GGGgCGUCUCUGCCg----CGCACaaa--ACU- -5'
29163 5' -54.7 NC_006150.1 + 32108 0.68 0.947232
Target:  5'- uCCUgGUGGAuGGCGGcCGCGUGUUcUGc -3'
miRNA:   3'- -GGGgCGUCU-CUGCC-GCGCACAAaACu -5'
29163 5' -54.7 NC_006150.1 + 103710 0.68 0.93836
Target:  5'- uCCUCGCGGGcauGACGGCcGCGgGgagUUUGGu -3'
miRNA:   3'- -GGGGCGUCU---CUGCCG-CGCaCa--AAACU- -5'
29163 5' -54.7 NC_006150.1 + 88150 0.68 0.93836
Target:  5'- gCCCCGguGggcgggggGGugGGCGCaGUGUg---- -3'
miRNA:   3'- -GGGGCguC--------UCugCCGCG-CACAaaacu -5'
29163 5' -54.7 NC_006150.1 + 93319 0.68 0.933586
Target:  5'- aCCCCGguGGauaauGCGGUGCGUGa----- -3'
miRNA:   3'- -GGGGCguCUc----UGCCGCGCACaaaacu -5'
29163 5' -54.7 NC_006150.1 + 195291 0.69 0.917901
Target:  5'- aUCCUGCAGAGcgccGCGGC-UGUGU-UUGAc -3'
miRNA:   3'- -GGGGCGUCUC----UGCCGcGCACAaAACU- -5'
29163 5' -54.7 NC_006150.1 + 13246 0.7 0.880473
Target:  5'- gCCaaGUGGAGGCGGCG-GUGUcgUGGg -3'
miRNA:   3'- -GGggCGUCUCUGCCGCgCACAaaACU- -5'
29163 5' -54.7 NC_006150.1 + 125390 0.72 0.801978
Target:  5'- aCCCCGUAGGGagaugGCGGCGCGccacGUUUc-- -3'
miRNA:   3'- -GGGGCGUCUC-----UGCCGCGCa---CAAAacu -5'
29163 5' -54.7 NC_006150.1 + 730 1.1 0.005126
Target:  5'- gCCCCGCAGAGACGGCGCGUGUUUUGAc -3'
miRNA:   3'- -GGGGCGUCUCUGCCGCGCACAAAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.