miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29167 5' -51.6 NC_006150.1 + 32931 0.66 0.996595
Target:  5'- gGCGGc--GGGGAUgGGCAGUcgcaauaagCCCa -3'
miRNA:   3'- gCGCCuuaUCCCUAaUCGUCAa--------GGGc -5'
29167 5' -51.6 NC_006150.1 + 600 0.66 0.996018
Target:  5'- gCGUGGAGggagGGGGAagGGCcgcguGUUCuuGg -3'
miRNA:   3'- -GCGCCUUa---UCCCUaaUCGu----CAAGggC- -5'
29167 5' -51.6 NC_006150.1 + 197784 0.67 0.994625
Target:  5'- gGCaaaGAAUAGGGAUcAGCAuGgcgCCCGu -3'
miRNA:   3'- gCGc--CUUAUCCCUAaUCGU-Caa-GGGC- -5'
29167 5' -51.6 NC_006150.1 + 94252 0.68 0.982842
Target:  5'- gGUGGcGUAGGuGUUGGCGGUUUUCa -3'
miRNA:   3'- gCGCCuUAUCCcUAAUCGUCAAGGGc -5'
29167 5' -51.6 NC_006150.1 + 88565 0.68 0.980811
Target:  5'- aGCuGGggUgcAGGGGc--GCGGUUCCCu -3'
miRNA:   3'- gCG-CCuuA--UCCCUaauCGUCAAGGGc -5'
29167 5' -51.6 NC_006150.1 + 311 0.69 0.978143
Target:  5'- cCGCGGAGgacggcugcccGGGGUUGGCGGUcUgCCa -3'
miRNA:   3'- -GCGCCUUau---------CCCUAAUCGUCA-AgGGc -5'
29167 5' -51.6 NC_006150.1 + 115157 0.7 0.953826
Target:  5'- uGCGGGAUGGGGAUaaUGGC----UCCGg -3'
miRNA:   3'- gCGCCUUAUCCCUA--AUCGucaaGGGC- -5'
29167 5' -51.6 NC_006150.1 + 181274 0.71 0.936104
Target:  5'- aCGCGGAGggcGGGAgaGGCGGcugCCCu -3'
miRNA:   3'- -GCGCCUUau-CCCUaaUCGUCaa-GGGc -5'
29167 5' -51.6 NC_006150.1 + 26640 1.1 0.009483
Target:  5'- uCGCGGAAUAGGGAUUAGCAGUUCCCGg -3'
miRNA:   3'- -GCGCCUUAUCCCUAAUCGUCAAGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.