miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29168 3' -54.3 NC_006150.1 + 74540 0.66 0.973857
Target:  5'- aUGUC-GAG-GGUGaUGUGGUaaucgucgcgcgccGCCAGCa -3'
miRNA:   3'- gAUAGuCUCaCCGC-ACACCG--------------UGGUCG- -5'
29168 3' -54.3 NC_006150.1 + 203645 0.66 0.97306
Target:  5'- --uUCGGAGUuuuucaaaggaGGCuuaaugaaauuguauGUGcGGCGCCGGCa -3'
miRNA:   3'- gauAGUCUCA-----------CCG---------------CACaCCGUGGUCG- -5'
29168 3' -54.3 NC_006150.1 + 70089 0.66 0.971969
Target:  5'- ---aCGGAcUGGCG-GUGGCGCU-GCg -3'
miRNA:   3'- gauaGUCUcACCGCaCACCGUGGuCG- -5'
29168 3' -54.3 NC_006150.1 + 147084 0.66 0.969104
Target:  5'- --cUUAGGGUGGuCGUGUGGUgguggggggcuGCUuGCg -3'
miRNA:   3'- gauAGUCUCACC-GCACACCG-----------UGGuCG- -5'
29168 3' -54.3 NC_006150.1 + 154799 0.66 0.969104
Target:  5'- --cUCAGcaAGUGauCG-GUGGCACCAGUa -3'
miRNA:   3'- gauAGUC--UCACc-GCaCACCGUGGUCG- -5'
29168 3' -54.3 NC_006150.1 + 114003 0.67 0.962759
Target:  5'- -aGUCGGGGuUGGCGac-GGCGCaUAGCa -3'
miRNA:   3'- gaUAGUCUC-ACCGCacaCCGUG-GUCG- -5'
29168 3' -54.3 NC_006150.1 + 220596 0.67 0.962759
Target:  5'- ---cCAGuuUGGCGU-UGGCACCAuuuGCg -3'
miRNA:   3'- gauaGUCucACCGCAcACCGUGGU---CG- -5'
29168 3' -54.3 NC_006150.1 + 101288 0.67 0.947469
Target:  5'- aCUGUguGuccUGGCaGUGUGGCuGCUGGCa -3'
miRNA:   3'- -GAUAguCuc-ACCG-CACACCG-UGGUCG- -5'
29168 3' -54.3 NC_006150.1 + 213180 0.69 0.899558
Target:  5'- uUGUCAGGGUGGaCGUa--GUGCCAGUa -3'
miRNA:   3'- gAUAGUCUCACC-GCAcacCGUGGUCG- -5'
29168 3' -54.3 NC_006150.1 + 148416 0.7 0.86267
Target:  5'- ---gCGGAGUcucauagcagugggGGUGUGUGGCACUauacaGGCg -3'
miRNA:   3'- gauaGUCUCA--------------CCGCACACCGUGG-----UCG- -5'
29168 3' -54.3 NC_006150.1 + 183107 0.71 0.841621
Target:  5'- --cUCGGGGUGGCGaaaGUcGGgGCCGGUg -3'
miRNA:   3'- gauAGUCUCACCGCa--CA-CCgUGGUCG- -5'
29168 3' -54.3 NC_006150.1 + 150233 0.71 0.81578
Target:  5'- ---gCGGGGUGGCGUucGGCACCcugcccgGGCa -3'
miRNA:   3'- gauaGUCUCACCGCAcaCCGUGG-------UCG- -5'
29168 3' -54.3 NC_006150.1 + 110523 0.72 0.770885
Target:  5'- ---gCGGuGUGGUgcacgccGUGUGGCAuCCAGCg -3'
miRNA:   3'- gauaGUCuCACCG-------CACACCGU-GGUCG- -5'
29168 3' -54.3 NC_006150.1 + 45307 1.11 0.004476
Target:  5'- uCUAUCAGAGUGGCGUGUGGCACCAGCc -3'
miRNA:   3'- -GAUAGUCUCACCGCACACCGUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.