miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29169 3' -50.4 NC_006150.1 + 4213 0.66 0.99929
Target:  5'- uGGUCACCgu-AGGcCuGCUGUGCGg -3'
miRNA:   3'- cCUAGUGGacuUUCaGcUGACACGCa -5'
29169 3' -50.4 NC_006150.1 + 155663 0.66 0.99929
Target:  5'- gGGAUUcagACCUGucccuguGGUacUGugUGUGCGUg -3'
miRNA:   3'- -CCUAG---UGGACuu-----UCA--GCugACACGCA- -5'
29169 3' -50.4 NC_006150.1 + 123930 0.66 0.99929
Target:  5'- --cUCACCUGAGAGUUgaGGCUGauaaagGUGg -3'
miRNA:   3'- ccuAGUGGACUUUCAG--CUGACa-----CGCa -5'
29169 3' -50.4 NC_006150.1 + 28250 0.66 0.998466
Target:  5'- aGAUCACCUGAAcauaucugaAGU--GCgGUGCGUu -3'
miRNA:   3'- cCUAGUGGACUU---------UCAgcUGaCACGCA- -5'
29169 3' -50.4 NC_006150.1 + 62778 0.67 0.996946
Target:  5'- aGGuAUCuuaCUGAgcGUCGugUGUGCa- -3'
miRNA:   3'- -CC-UAGug-GACUuuCAGCugACACGca -5'
29169 3' -50.4 NC_006150.1 + 92460 0.68 0.995809
Target:  5'- uGGAUCGCUUGAucGggGGCgUGUGCu- -3'
miRNA:   3'- -CCUAGUGGACUuuCagCUG-ACACGca -5'
29169 3' -50.4 NC_006150.1 + 220793 0.68 0.994348
Target:  5'- aGGAUgCAUUgcaGAGGUCGGCUGaUGCGg -3'
miRNA:   3'- -CCUA-GUGGac-UUUCAGCUGAC-ACGCa -5'
29169 3' -50.4 NC_006150.1 + 121687 0.69 0.988864
Target:  5'- uGGAUCAUUUGggGcggaaugcuaauGUCguGACUGUGUGUc -3'
miRNA:   3'- -CCUAGUGGACuuU------------CAG--CUGACACGCA- -5'
29169 3' -50.4 NC_006150.1 + 149911 0.7 0.983982
Target:  5'- uGGGUC-UCUGGAAGcCGGCcacgGUGCGa -3'
miRNA:   3'- -CCUAGuGGACUUUCaGCUGa---CACGCa -5'
29169 3' -50.4 NC_006150.1 + 69758 0.71 0.96319
Target:  5'- gGGcAUCgcuGCCUGcgGGUCGGCUGgaagGCGg -3'
miRNA:   3'- -CC-UAG---UGGACuuUCAGCUGACa---CGCa -5'
29169 3' -50.4 NC_006150.1 + 129591 0.72 0.955912
Target:  5'- cGAUCGCCUcaaaGAGGUgcugaaGGCUGUGCGUg -3'
miRNA:   3'- cCUAGUGGAc---UUUCAg-----CUGACACGCA- -5'
29169 3' -50.4 NC_006150.1 + 12778 0.74 0.898913
Target:  5'- cGGuaGUCACCUGAGGGgccggCGGCUGUGg-- -3'
miRNA:   3'- -CC--UAGUGGACUUUCa----GCUGACACgca -5'
29169 3' -50.4 NC_006150.1 + 59780 1.05 0.02671
Target:  5'- aGAUCACCUGAAAGUCGACUGUGCGUu -3'
miRNA:   3'- cCUAGUGGACUUUCAGCUGACACGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.