Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2917 | 3' | -59 | NC_001493.1 | + | 69467 | 0.67 | 0.737405 |
Target: 5'- uGCACUGUacgGGCGcGCCagCCUCGGACUc -3' miRNA: 3'- -CGUGGCAccaCUGC-CGG--GGAGUCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 78896 | 0.67 | 0.737405 |
Target: 5'- cCGCCGUcagcauucggGGUauGcCGGCCUCggUCAGACCg -3' miRNA: 3'- cGUGGCA----------CCA--CuGCCGGGG--AGUCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 128365 | 0.67 | 0.727816 |
Target: 5'- ---aCGUGGUGAcCGGaCCCgUCcGGCCc -3' miRNA: 3'- cgugGCACCACU-GCC-GGGgAGuCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 24548 | 0.67 | 0.727816 |
Target: 5'- gGCACCGUagcGGUcACGGCCgUUCccguggaacuGACCg -3' miRNA: 3'- -CGUGGCA---CCAcUGCCGGgGAGu---------CUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 12811 | 0.67 | 0.727816 |
Target: 5'- ---aCGUGGUGAcCGGaCCCgUCcGGCCc -3' miRNA: 3'- cgugGCACCACU-GCC-GGGgAGuCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 33386 | 0.67 | 0.698608 |
Target: 5'- cCAcCCG-GGUGACGGugcgaucguCCUCUCGGGCg -3' miRNA: 3'- cGU-GGCaCCACUGCC---------GGGGAGUCUGg -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 11105 | 0.67 | 0.698608 |
Target: 5'- --cCCGUGG-GACGGacgcuCacaCUCAGACCg -3' miRNA: 3'- cguGGCACCaCUGCCg----Gg--GAGUCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 20828 | 0.67 | 0.698608 |
Target: 5'- uGCACgGacUGGUGGCGGCUCUcgGGAUg -3' miRNA: 3'- -CGUGgC--ACCACUGCCGGGGagUCUGg -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 110810 | 0.67 | 0.698608 |
Target: 5'- -gAUCGUGGUGAuauggccgggccCGGCCCUUCcagucgugAGACa -3' miRNA: 3'- cgUGGCACCACU------------GCCGGGGAG--------UCUGg -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 126660 | 0.67 | 0.698608 |
Target: 5'- --cCCGUGG-GACGGacgcuCacaCUCAGACCg -3' miRNA: 3'- cguGGCACCaCUGCCg----Gg--GAGUCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 63234 | 0.68 | 0.678856 |
Target: 5'- aCACCGUGGUGAccaccgcacCGGCgacgCCCgCGGgaGCCa -3' miRNA: 3'- cGUGGCACCACU---------GCCG----GGGaGUC--UGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 63842 | 0.68 | 0.678856 |
Target: 5'- aCACCGUGGUGAccaccacacCGGCgaugCCCgCGGgaGCCa -3' miRNA: 3'- cGUGGCACCACU---------GCCG----GGGaGUC--UGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 93949 | 0.68 | 0.668921 |
Target: 5'- aGC-CCGUGGUcACGGCCUCgucgUAGuacGCCc -3' miRNA: 3'- -CGuGGCACCAcUGCCGGGGa---GUC---UGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 94908 | 0.68 | 0.658956 |
Target: 5'- cGCACaCGguggGGUGAagaucaCGguccucaaggaGCCCCUCGGGCUg -3' miRNA: 3'- -CGUG-GCa---CCACU------GC-----------CGGGGAGUCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 63280 | 0.68 | 0.648972 |
Target: 5'- gGCACCGUGGUGAccaccacacCGGCgaugCCCgCGGGa- -3' miRNA: 3'- -CGUGGCACCACU---------GCCG----GGGaGUCUgg -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 95900 | 0.69 | 0.628973 |
Target: 5'- cGUACCgGUGGccGGCGGUCCgCUC-GACUa -3' miRNA: 3'- -CGUGG-CACCa-CUGCCGGG-GAGuCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 125662 | 0.69 | 0.618973 |
Target: 5'- aCGCgGUGGUuuguGAUGGucgcggcgcuCCCUUCAGACCc -3' miRNA: 3'- cGUGgCACCA----CUGCC----------GGGGAGUCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 10108 | 0.69 | 0.618973 |
Target: 5'- aCGCgGUGGUuuguGAUGGucgcggcgcuCCCUUCAGACCc -3' miRNA: 3'- cGUGgCACCA----CUGCC----------GGGGAGUCUGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 8274 | 0.69 | 0.608982 |
Target: 5'- aGCACCGaugGGUGGgaGCCCCggcgCGGcGCCa -3' miRNA: 3'- -CGUGGCa--CCACUgcCGGGGa---GUC-UGG- -5' |
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2917 | 3' | -59 | NC_001493.1 | + | 123828 | 0.69 | 0.608982 |
Target: 5'- aGCACCGaugGGUGGgaGCCCCggcgCGGcGCCa -3' miRNA: 3'- -CGUGGCa--CCACUgcCGGGGa---GUC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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