Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2917 | 5' | -51.1 | NC_001493.1 | + | 77495 | 0.66 | 0.992819 |
Target: 5'- uGAGUCUGGGGAUCCuCUcguagaaaacgaugCugUUGGGa -3' miRNA: 3'- cCUCAGGUCUUUAGG-GAa-------------GugAGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 34110 | 0.66 | 0.990038 |
Target: 5'- aGGAGUCUgccauauuuGGGGAUgCUCgggGCUCGGGa -3' miRNA: 3'- -CCUCAGG---------UCUUUA-GGGaagUGAGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 25383 | 0.66 | 0.992404 |
Target: 5'- cGGAaUCCAGGuacaaCCguacaCGCUCGGGa -3' miRNA: 3'- -CCUcAGGUCUuuag-GGaa---GUGAGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 128263 | 0.66 | 0.993407 |
Target: 5'- gGGAGUCUcccacGGggGagCC-UCAC-CGGGa -3' miRNA: 3'- -CCUCAGG-----UCuuUagGGaAGUGaGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 12709 | 0.66 | 0.993407 |
Target: 5'- gGGAGUCUcccacGGggGagCC-UCAC-CGGGa -3' miRNA: 3'- -CCUCAGG-----UCuuUagGGaAGUGaGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 114535 | 0.67 | 0.987131 |
Target: 5'- gGGGGUUCAGAuGGUCCgCggCACccaGGGg -3' miRNA: 3'- -CCUCAGGUCU-UUAGG-GaaGUGag-CCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 45305 | 0.67 | 0.981596 |
Target: 5'- cGGA-UCCGGAGGgacaCCCUUCgACUCcGGa -3' miRNA: 3'- -CCUcAGGUCUUUa---GGGAAG-UGAGcCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 30739 | 0.67 | 0.981596 |
Target: 5'- uGGGGUCCaAGGGAcUCCCUUgCGCggaacccgCGGu -3' miRNA: 3'- -CCUCAGG-UCUUU-AGGGAA-GUGa-------GCCc -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 128525 | 0.67 | 0.985274 |
Target: 5'- cGGGG-CCGGAcgGGUCCggUCACcacguggagaaccUCGGGa -3' miRNA: 3'- -CCUCaGGUCU--UUAGGgaAGUG-------------AGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 12971 | 0.67 | 0.985274 |
Target: 5'- cGGGG-CCGGAcgGGUCCggUCACcacguggagaaccUCGGGa -3' miRNA: 3'- -CCUCaGGUCU--UUAGGgaAGUG-------------AGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 111412 | 0.68 | 0.968356 |
Target: 5'- cGAGcCCGGGAGcCCCUguaccuaUCACaCGGGg -3' miRNA: 3'- cCUCaGGUCUUUaGGGA-------AGUGaGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 40377 | 0.7 | 0.920241 |
Target: 5'- aGGuGGUCac-GAGUCUCUUCAgCUCGGGg -3' miRNA: 3'- -CC-UCAGgucUUUAGGGAAGU-GAGCCC- -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 49906 | 0.7 | 0.936402 |
Target: 5'- uGGGGUCCAGAGagacuaccagGUUCCUgaucCAgUCGGu -3' miRNA: 3'- -CCUCAGGUCUU----------UAGGGAa---GUgAGCCc -5' |
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2917 | 5' | -51.1 | NC_001493.1 | + | 44015 | 1.14 | 0.004062 |
Target: 5'- aGGAGUCCAGAAAUCCCUUCACUCGGGa -3' miRNA: 3'- -CCUCAGGUCUUUAGGGAAGUGAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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