Results 61 - 80 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29170 | 5' | -56 | NC_006150.1 | + | 70848 | 0.68 | 0.860393 |
Target: 5'- gGCCGCCACuaAGCAGCuaggucccGCCGUccugcAGCGa -3' miRNA: 3'- gUGGUGGUG--UCGUUGu-------CGGCGu----UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 88802 | 0.68 | 0.860393 |
Target: 5'- uCGCCGuCgCAUAGcCGGCGGCUGgAGGCGa -3' miRNA: 3'- -GUGGU-G-GUGUC-GUUGUCGGCgUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 37227 | 0.68 | 0.867102 |
Target: 5'- gCAUCACCgugccguagaGCAGCAcaugcacACAGCCGUuGGUGu -3' miRNA: 3'- -GUGGUGG----------UGUCGU-------UGUCGGCGuUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 7862 | 0.68 | 0.867837 |
Target: 5'- gUAUUACCACuGCAAUGugagacGCCGUGAGCGu -3' miRNA: 3'- -GUGGUGGUGuCGUUGU------CGGCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 65740 | 0.68 | 0.881407 |
Target: 5'- aCGCUACCgggccggACAGCGGCAGCUGgAAauGCa -3' miRNA: 3'- -GUGGUGG-------UGUCGUUGUCGGCgUU--CGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 125370 | 0.68 | 0.87436 |
Target: 5'- gUACUACCGCAGCGACccGGaccCCGUAgggagauGGCGg -3' miRNA: 3'- -GUGGUGGUGUCGUUG--UC---GGCGU-------UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 68445 | 0.68 | 0.8821 |
Target: 5'- -gUCACCGCAGCAccGCuAGCgGCGucAGCa -3' miRNA: 3'- guGGUGGUGUCGU--UG-UCGgCGU--UCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 169176 | 0.69 | 0.836884 |
Target: 5'- aCACCgaACCACuAGCAcCAGCCcUAGGCa -3' miRNA: 3'- -GUGG--UGGUG-UCGUuGUCGGcGUUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 70194 | 0.69 | 0.844911 |
Target: 5'- aCACCuguCCGCGGUAccugguACcGCUGCGAGCu -3' miRNA: 3'- -GUGGu--GGUGUCGU------UGuCGGCGUUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 111734 | 0.69 | 0.836884 |
Target: 5'- aGCCGCCAgcCAGCAGCAGCagaaaaccauCGUccucGGCGg -3' miRNA: 3'- gUGGUGGU--GUCGUUGUCG----------GCGu---UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 38444 | 0.69 | 0.836884 |
Target: 5'- uCACgACCAUAGCugAACcuCUGCAAGCGc -3' miRNA: 3'- -GUGgUGGUGUCG--UUGucGGCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 90828 | 0.69 | 0.836884 |
Target: 5'- gCACaCAUCACcGCGGguGCCGCAGGa- -3' miRNA: 3'- -GUG-GUGGUGuCGUUguCGGCGUUCgc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 219756 | 0.69 | 0.836884 |
Target: 5'- aGCgGCgGCGGCAGgaccuggcgUGGCCGCGGGUGg -3' miRNA: 3'- gUGgUGgUGUCGUU---------GUCGGCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 122646 | 0.69 | 0.811747 |
Target: 5'- uGCCcgaGCCACGGUGACGcGCCGCuGGaCGa -3' miRNA: 3'- gUGG---UGGUGUCGUUGU-CGGCGuUC-GC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 91752 | 0.69 | 0.844911 |
Target: 5'- -uCCACCAUGGcCAGCAGCgCGUgcaugcuggGAGCGu -3' miRNA: 3'- guGGUGGUGUC-GUUGUCG-GCG---------UUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 197290 | 0.69 | 0.844911 |
Target: 5'- aGCCGuauaCACAGCca-GGCUGCGAGCa -3' miRNA: 3'- gUGGUg---GUGUCGuugUCGGCGUUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 203216 | 0.69 | 0.844911 |
Target: 5'- cCGCCuCCGCAGCAgcaACAGCaugaacaagUGCcAGCGg -3' miRNA: 3'- -GUGGuGGUGUCGU---UGUCG---------GCGuUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 120819 | 0.69 | 0.844911 |
Target: 5'- aCGCCgGCCGuuGUAGCugGGCCGCGAGaCGa -3' miRNA: 3'- -GUGG-UGGUguCGUUG--UCGGCGUUC-GC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 73931 | 0.69 | 0.844911 |
Target: 5'- gGCCGCCGCuugcgAGuCAACGaCCGCAgAGCGg -3' miRNA: 3'- gUGGUGGUG-----UC-GUUGUcGGCGU-UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 63212 | 0.69 | 0.836884 |
Target: 5'- gCGCCucCCACGGCGGCaaaaagaaGGCCGCuGAGUu -3' miRNA: 3'- -GUGGu-GGUGUCGUUG--------UCGGCG-UUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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