miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 47679 0.68 0.852749
Target:  5'- uCAUCAUCAuCGGCGACGGCgGCc-GCGu -3'
miRNA:   3'- -GUGGUGGU-GUCGUUGUCGgCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 182874 0.68 0.852749
Target:  5'- uCGCCACCccgaggacgacCAGCuAguGCCGCAGGUa -3'
miRNA:   3'- -GUGGUGGu----------GUCGuUguCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 847 0.68 0.852749
Target:  5'- gCGCCGgCGguGUAGacgguguGGCCGCGAGCGc -3'
miRNA:   3'- -GUGGUgGUguCGUUg------UCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 95979 0.68 0.888909
Target:  5'- -uCUACUuCGGCGGCAgGCCGCGuauGCGg -3'
miRNA:   3'- guGGUGGuGUCGUUGU-CGGCGUu--CGC- -5'
29170 5' -56 NC_006150.1 + 70957 0.68 0.8821
Target:  5'- -gUCAuUCGCGGCGaguGCAGCCGCuuGCGg -3'
miRNA:   3'- guGGU-GGUGUCGU---UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 148238 0.68 0.8821
Target:  5'- gCACCAaCAuCAGCAacaACAGCagcaGCAGGCu -3'
miRNA:   3'- -GUGGUgGU-GUCGU---UGUCGg---CGUUCGc -5'
29170 5' -56 NC_006150.1 + 68445 0.68 0.8821
Target:  5'- -gUCACCGCAGCAccGCuAGCgGCGucAGCa -3'
miRNA:   3'- guGGUGGUGUCGU--UG-UCGgCGU--UCGc -5'
29170 5' -56 NC_006150.1 + 119890 0.68 0.881407
Target:  5'- gAUCGCUACAGCAugGccuguuuGCCGCGGGa- -3'
miRNA:   3'- gUGGUGGUGUCGUugU-------CGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 146423 0.68 0.875074
Target:  5'- gACCGCCGCuGCAACAgagaaugagacGCCaCAGGUa -3'
miRNA:   3'- gUGGUGGUGuCGUUGU-----------CGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 148085 0.68 0.8821
Target:  5'- gUugCACCACGGUAcaacACAGCCacccuuugcCGAGCGc -3'
miRNA:   3'- -GugGUGGUGUCGU----UGUCGGc--------GUUCGC- -5'
29170 5' -56 NC_006150.1 + 92652 0.68 0.8821
Target:  5'- uCAUCaACCGCAGCAGaacucGCCGCcGGUGc -3'
miRNA:   3'- -GUGG-UGGUGUCGUUgu---CGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 87845 0.68 0.8821
Target:  5'- gCACUcCCACAGC-ACAGCaUGCGAGg- -3'
miRNA:   3'- -GUGGuGGUGUCGuUGUCG-GCGUUCgc -5'
29170 5' -56 NC_006150.1 + 167580 0.68 0.8821
Target:  5'- aCAUCACCGCGGCGGCuGGCgGaCcAGUGu -3'
miRNA:   3'- -GUGGUGGUGUCGUUG-UCGgC-GuUCGC- -5'
29170 5' -56 NC_006150.1 + 140655 0.67 0.919593
Target:  5'- gACCGgCACGGCcGguGCCgGCAAGaCGu -3'
miRNA:   3'- gUGGUgGUGUCGuUguCGG-CGUUC-GC- -5'
29170 5' -56 NC_006150.1 + 120274 0.67 0.919593
Target:  5'- uGCCACCuCAGCcAUuuuacccuuGGCCGCuuuAAGCGc -3'
miRNA:   3'- gUGGUGGuGUCGuUG---------UCGGCG---UUCGC- -5'
29170 5' -56 NC_006150.1 + 117371 0.67 0.919593
Target:  5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3'
miRNA:   3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 180386 0.67 0.908004
Target:  5'- gGCCGCCaACAGCAcguGC-GCUGCGGGa- -3'
miRNA:   3'- gUGGUGG-UGUCGU---UGuCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 111850 0.67 0.895499
Target:  5'- aUACCAUCACguguacGGCGACcaGGCCGacgaugaAAGCGg -3'
miRNA:   3'- -GUGGUGGUG------UCGUUG--UCGGCg------UUCGC- -5'
29170 5' -56 NC_006150.1 + 96220 0.67 0.895499
Target:  5'- aGCUACCACAG-AACAGUuuucUGCGuuGGCGg -3'
miRNA:   3'- gUGGUGGUGUCgUUGUCG----GCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 123213 0.67 0.895499
Target:  5'- uUugCGCCAUAGCuAUAGCgCGCGucuguauaccGGCGu -3'
miRNA:   3'- -GugGUGGUGUCGuUGUCG-GCGU----------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.