miRNA display CGI


Results 101 - 120 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 133352 0.67 0.901865
Target:  5'- gGCCACCgacGCGGCGucaGCAuGCUGCA-GCa -3'
miRNA:   3'- gUGGUGG---UGUCGU---UGU-CGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 183960 0.67 0.901865
Target:  5'- cCGCUGCCAucuuggaguaucCAGgAGCAGCCGacgAAGCGu -3'
miRNA:   3'- -GUGGUGGU------------GUCgUUGUCGGCg--UUCGC- -5'
29170 5' -56 NC_006150.1 + 96220 0.67 0.895499
Target:  5'- aGCUACCACAG-AACAGUuuucUGCGuuGGCGg -3'
miRNA:   3'- gUGGUGGUGUCgUUGUCG----GCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 111850 0.67 0.895499
Target:  5'- aUACCAUCACguguacGGCGACcaGGCCGacgaugaAAGCGg -3'
miRNA:   3'- -GUGGUGGUG------UCGUUG--UCGGCg------UUCGC- -5'
29170 5' -56 NC_006150.1 + 123213 0.67 0.895499
Target:  5'- uUugCGCCAUAGCuAUAGCgCGCGucuguauaccGGCGu -3'
miRNA:   3'- -GugGUGGUGUCGuUGUCG-GCGU----------UCGC- -5'
29170 5' -56 NC_006150.1 + 152477 0.67 0.913914
Target:  5'- aCGCuCugCGCGGCggUGGCCGaaAAGCa -3'
miRNA:   3'- -GUG-GugGUGUCGuuGUCGGCg-UUCGc -5'
29170 5' -56 NC_006150.1 + 174062 0.67 0.919593
Target:  5'- -gUUugCGaGGCAcacGCGGCCGCGAGCa -3'
miRNA:   3'- guGGugGUgUCGU---UGUCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 180386 0.67 0.908004
Target:  5'- gGCCGCCaACAGCAcguGC-GCUGCGGGa- -3'
miRNA:   3'- gUGGUGG-UGUCGU---UGuCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 117371 0.67 0.919593
Target:  5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3'
miRNA:   3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 140655 0.67 0.919593
Target:  5'- gACCGgCACGGCcGguGCCgGCAAGaCGu -3'
miRNA:   3'- gUGGUgGUGUCGuUguCGG-CGUUC-GC- -5'
29170 5' -56 NC_006150.1 + 214875 0.66 0.944504
Target:  5'- cUACUACgGCGGguGCuGCCGCcucGCGc -3'
miRNA:   3'- -GUGGUGgUGUCguUGuCGGCGuu-CGC- -5'
29170 5' -56 NC_006150.1 + 45849 0.66 0.924505
Target:  5'- uGCUACCACAGCGAggcauacCGGCUGCu-GUu -3'
miRNA:   3'- gUGGUGGUGUCGUU-------GUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 84626 0.66 0.948794
Target:  5'- --aCACgUAUGGCAACAugucccGCCGCAAGCc -3'
miRNA:   3'- gugGUG-GUGUCGUUGU------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 8530 0.66 0.948794
Target:  5'- gGCCACCACAGCGAUAaCaGCGAa-- -3'
miRNA:   3'- gUGGUGGUGUCGUUGUcGgCGUUcgc -5'
29170 5' -56 NC_006150.1 + 174658 0.66 0.948794
Target:  5'- gCGCCACUucuggcguuACGcCAGCcGCCGCAGGUa -3'
miRNA:   3'- -GUGGUGG---------UGUcGUUGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 139397 0.66 0.948794
Target:  5'- cCGCCGCCugGGguACgggagGGCauCAGGCGa -3'
miRNA:   3'- -GUGGUGGugUCguUG-----UCGgcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 160150 0.66 0.944504
Target:  5'- aUACUAcCCACGGUGcUGGCCGCcAGUGg -3'
miRNA:   3'- -GUGGU-GGUGUCGUuGUCGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 178573 0.66 0.948794
Target:  5'- aCAUCugCACaacgacuuguGGCAGCcggAGCCaGCAAGCc -3'
miRNA:   3'- -GUGGugGUG----------UCGUUG---UCGG-CGUUCGc -5'
29170 5' -56 NC_006150.1 + 8087 0.66 0.948794
Target:  5'- gGCCAgCGCAGUcAguGCCGCccucgcugugAAGCa -3'
miRNA:   3'- gUGGUgGUGUCGuUguCGGCG----------UUCGc -5'
29170 5' -56 NC_006150.1 + 106379 0.66 0.948375
Target:  5'- gGCCugUugGGCAACAGCgucgaugCGCucuacauucagGAGCGc -3'
miRNA:   3'- gUGGugGugUCGUUGUCG-------GCG-----------UUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.