miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 106379 0.66 0.948375
Target:  5'- gGCCugUugGGCAACAGCgucgaugCGCucuacauucagGAGCGc -3'
miRNA:   3'- gUGGugGugUCGUUGUCG-------GCG-----------UUCGC- -5'
29170 5' -56 NC_006150.1 + 106507 0.67 0.908004
Target:  5'- cCGCgGCCGCGGCuguuGCCGUcAGCu -3'
miRNA:   3'- -GUGgUGGUGUCGuuguCGGCGuUCGc -5'
29170 5' -56 NC_006150.1 + 106542 0.66 0.939985
Target:  5'- gGCCGaacgagUCACAGC-ACAGCCgaGCAcccAGCGa -3'
miRNA:   3'- gUGGU------GGUGUCGuUGUCGG--CGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 106588 0.66 0.933765
Target:  5'- uCACCccaugagcucugugGCCACucCAGCGGCCuCGAGCGu -3'
miRNA:   3'- -GUGG--------------UGGUGucGUUGUCGGcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 107392 0.7 0.776049
Target:  5'- uCGCCACCGuCGGCucACAGuaGCAAGUc -3'
miRNA:   3'- -GUGGUGGU-GUCGu-UGUCggCGUUCGc -5'
29170 5' -56 NC_006150.1 + 111734 0.69 0.836884
Target:  5'- aGCCGCCAgcCAGCAGCAGCagaaaaccauCGUccucGGCGg -3'
miRNA:   3'- gUGGUGGU--GUCGUUGUCG----------GCGu---UCGC- -5'
29170 5' -56 NC_006150.1 + 111850 0.67 0.895499
Target:  5'- aUACCAUCACguguacGGCGACcaGGCCGacgaugaAAGCGg -3'
miRNA:   3'- -GUGGUGGUG------UCGUUG--UCGGCg------UUCGC- -5'
29170 5' -56 NC_006150.1 + 111914 0.7 0.76679
Target:  5'- gUACCGCCACAG-AACcuGCC-CAGGCGc -3'
miRNA:   3'- -GUGGUGGUGUCgUUGu-CGGcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 113141 0.7 0.785182
Target:  5'- aACCACaGCAGCAACAGCCaCAAa-- -3'
miRNA:   3'- gUGGUGgUGUCGUUGUCGGcGUUcgc -5'
29170 5' -56 NC_006150.1 + 113832 0.76 0.462966
Target:  5'- -uCCGCCGCAGCGGCAGCUGguGccucagggGCGg -3'
miRNA:   3'- guGGUGGUGUCGUUGUCGGCguU--------CGC- -5'
29170 5' -56 NC_006150.1 + 114088 0.67 0.901865
Target:  5'- uGCCGCCccugagGCAcCAGCuGCCGCugcGGCGg -3'
miRNA:   3'- gUGGUGG------UGUcGUUGuCGGCGu--UCGC- -5'
29170 5' -56 NC_006150.1 + 114159 0.66 0.939985
Target:  5'- uGCCcuGgCGCGGCAGCGGUCGCuucacauGGUGc -3'
miRNA:   3'- gUGG--UgGUGUCGUUGUCGGCGu------UCGC- -5'
29170 5' -56 NC_006150.1 + 117371 0.67 0.919593
Target:  5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3'
miRNA:   3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 118779 0.71 0.718923
Target:  5'- uCACgGCCuccgGGCAGCAGCUGCGAGg- -3'
miRNA:   3'- -GUGgUGGug--UCGUUGUCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 119890 0.68 0.881407
Target:  5'- gAUCGCUACAGCAugGccuguuuGCCGCGGGa- -3'
miRNA:   3'- gUGGUGGUGUCGUugU-------CGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 120274 0.67 0.919593
Target:  5'- uGCCACCuCAGCcAUuuuacccuuGGCCGCuuuAAGCGc -3'
miRNA:   3'- gUGGUGGuGUCGuUG---------UCGGCG---UUCGC- -5'
29170 5' -56 NC_006150.1 + 120819 0.69 0.844911
Target:  5'- aCGCCgGCCGuuGUAGCugGGCCGCGAGaCGa -3'
miRNA:   3'- -GUGG-UGGUguCGUUG--UCGGCGUUC-GC- -5'
29170 5' -56 NC_006150.1 + 121295 0.66 0.935235
Target:  5'- gGCCGCUACGGCcAUuguGCCuCGAGUGu -3'
miRNA:   3'- gUGGUGGUGUCGuUGu--CGGcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 122646 0.69 0.811747
Target:  5'- uGCCcgaGCCACGGUGACGcGCCGCuGGaCGa -3'
miRNA:   3'- gUGG---UGGUGUCGUUGU-CGGCGuUC-GC- -5'
29170 5' -56 NC_006150.1 + 123213 0.67 0.895499
Target:  5'- uUugCGCCAUAGCuAUAGCgCGCGucuguauaccGGCGu -3'
miRNA:   3'- -GugGUGGUGUCGuUGUCG-GCGU----------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.