Results 41 - 60 of 140 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29170 | 5' | -56 | NC_006150.1 | + | 161 | 0.75 | 0.49087 |
Target: 5'- aCACaCACaCACAGCAGCagGGCCGCA-GUGa -3' miRNA: 3'- -GUG-GUG-GUGUCGUUG--UCGGCGUuCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 220179 | 0.76 | 0.472177 |
Target: 5'- aGCUGCCGCAGCuGCGGCUGCGuugGGCc -3' miRNA: 3'- gUGGUGGUGUCGuUGUCGGCGU---UCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 113832 | 0.76 | 0.462966 |
Target: 5'- -uCCGCCGCAGCGGCAGCUGguGccucagggGCGg -3' miRNA: 3'- guGGUGGUGUCGUUGUCGGCguU--------CGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 196725 | 0.77 | 0.384682 |
Target: 5'- cCAgCACCACAGCcgUAGCCGUAacuAGCGu -3' miRNA: 3'- -GUgGUGGUGUCGuuGUCGGCGU---UCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 180840 | 0.78 | 0.352815 |
Target: 5'- gGCgGCCugAGCAACAGCgGCGucGGCGu -3' miRNA: 3'- gUGgUGGugUCGUUGUCGgCGU--UCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 180909 | 0.73 | 0.618825 |
Target: 5'- gCGCgGCCACAGCGacuuGCGGuuGCGgugacGGCGg -3' miRNA: 3'- -GUGgUGGUGUCGU----UGUCggCGU-----UCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 154568 | 0.73 | 0.62892 |
Target: 5'- uCACUugCugAGCGaugagcacgGCGGCCGCGAGgGc -3' miRNA: 3'- -GUGGugGugUCGU---------UGUCGGCGUUCgC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 35962 | 0.7 | 0.794182 |
Target: 5'- gCugCACaCGCAGCugcucAGCAGCUGuCAGGUGa -3' miRNA: 3'- -GugGUG-GUGUCG-----UUGUCGGC-GUUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 2167 | 0.7 | 0.785182 |
Target: 5'- aCAcCCGCaACGGCAcCAGCCGcCAGGCc -3' miRNA: 3'- -GU-GGUGgUGUCGUuGUCGGC-GUUCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 107392 | 0.7 | 0.776049 |
Target: 5'- uCGCCACCGuCGGCucACAGuaGCAAGUc -3' miRNA: 3'- -GUGGUGGU-GUCGu-UGUCggCGUUCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 65176 | 0.7 | 0.776049 |
Target: 5'- gGCC-CC-CAGCGccACGGCCGcCGAGCu -3' miRNA: 3'- gUGGuGGuGUCGU--UGUCGGC-GUUCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 213156 | 0.7 | 0.776049 |
Target: 5'- uGCUuuuACUACAGCAGCAaacacuaCCGCAAGCa -3' miRNA: 3'- gUGG---UGGUGUCGUUGUc------GGCGUUCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 88683 | 0.7 | 0.76679 |
Target: 5'- cUACUGCUuCAGCAGCAGCUGCuccuGCu -3' miRNA: 3'- -GUGGUGGuGUCGUUGUCGGCGuu--CGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 187411 | 0.7 | 0.763989 |
Target: 5'- aAUCACCACGuucucauuagaaccGCAugAGCCGCAgagaGGCu -3' miRNA: 3'- gUGGUGGUGU--------------CGUugUCGGCGU----UCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 73694 | 0.71 | 0.738348 |
Target: 5'- gACuCGCa--AGCGGCGGCCGCGAcGCGg -3' miRNA: 3'- gUG-GUGgugUCGUUGUCGGCGUU-CGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 124620 | 0.71 | 0.738348 |
Target: 5'- gCAUCACCGCaugcacaaaaagAGCAaggcgGCGGCgGCGGGCGc -3' miRNA: 3'- -GUGGUGGUG------------UCGU-----UGUCGgCGUUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 69402 | 0.71 | 0.738348 |
Target: 5'- gCACCACCACGGUGG-AGUCGCAcguccgcgccgAGCa -3' miRNA: 3'- -GUGGUGGUGUCGUUgUCGGCGU-----------UCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 63916 | 0.71 | 0.709097 |
Target: 5'- uCACCACUcaGCAGCAagaACAGguCCaGCAGGCGc -3' miRNA: 3'- -GUGGUGG--UGUCGU---UGUC--GG-CGUUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 85932 | 0.72 | 0.689263 |
Target: 5'- aAUCACCACuGGCGucgaACGGUCGCAcAGCGa -3' miRNA: 3'- gUGGUGGUG-UCGU----UGUCGGCGU-UCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 72119 | 0.72 | 0.679273 |
Target: 5'- aGCCGCCGCuGUAGCAGCaGCAAcuGCu -3' miRNA: 3'- gUGGUGGUGuCGUUGUCGgCGUU--CGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home