miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 69402 0.71 0.738348
Target:  5'- gCACCACCACGGUGG-AGUCGCAcguccgcgccgAGCa -3'
miRNA:   3'- -GUGGUGGUGUCGUUgUCGGCGU-----------UCGc -5'
29170 5' -56 NC_006150.1 + 124620 0.71 0.738348
Target:  5'- gCAUCACCGCaugcacaaaaagAGCAaggcgGCGGCgGCGGGCGc -3'
miRNA:   3'- -GUGGUGGUG------------UCGU-----UGUCGgCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 135541 0.7 0.80304
Target:  5'- uGCCGCCGCGGUggUGGaCGUcgAGGCGg -3'
miRNA:   3'- gUGGUGGUGUCGuuGUCgGCG--UUCGC- -5'
29170 5' -56 NC_006150.1 + 72273 0.69 0.828676
Target:  5'- gGCgGCCuCGGCAGCGGCCaGUucuGCGa -3'
miRNA:   3'- gUGgUGGuGUCGUUGUCGG-CGuu-CGC- -5'
29170 5' -56 NC_006150.1 + 175951 0.69 0.828676
Target:  5'- gCACCAugguccgcagUCACAGCAcaccucguaacACAGuCCGCAGGUa -3'
miRNA:   3'- -GUGGU----------GGUGUCGU-----------UGUC-GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 69501 0.69 0.828676
Target:  5'- aCACCGCCuucCAGcCGAC--CCGCAGGCa -3'
miRNA:   3'- -GUGGUGGu--GUC-GUUGucGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 149843 0.69 0.836072
Target:  5'- aACCACCGUgaacacuguguugAGCAGCAGCaCGCcucGGCGg -3'
miRNA:   3'- gUGGUGGUG-------------UCGUUGUCG-GCGu--UCGC- -5'
29170 5' -56 NC_006150.1 + 167131 0.69 0.836884
Target:  5'- uGCCucguuACCACAGgGugAGCCGUAcuGGUGa -3'
miRNA:   3'- gUGG-----UGGUGUCgUugUCGGCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 169176 0.69 0.836884
Target:  5'- aCACCgaACCACuAGCAcCAGCCcUAGGCa -3'
miRNA:   3'- -GUGG--UGGUG-UCGUuGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 38444 0.69 0.836884
Target:  5'- uCACgACCAUAGCugAACcuCUGCAAGCGc -3'
miRNA:   3'- -GUGgUGGUGUCG--UUGucGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 76828 0.7 0.80304
Target:  5'- gCGCCACuCAUAGC-GguGCCGCA-GCa -3'
miRNA:   3'- -GUGGUG-GUGUCGuUguCGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 89588 0.7 0.80304
Target:  5'- uCACUGCCACAGCcgucgacgauCGGUCGCGGuGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGuu--------GUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 73694 0.71 0.738348
Target:  5'- gACuCGCa--AGCGGCGGCCGCGAcGCGg -3'
miRNA:   3'- gUG-GUGgugUCGUUGUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 187411 0.7 0.763989
Target:  5'- aAUCACCACGuucucauuagaaccGCAugAGCCGCAgagaGGCu -3'
miRNA:   3'- gUGGUGGUGU--------------CGUugUCGGCGU----UCGc -5'
29170 5' -56 NC_006150.1 + 88683 0.7 0.76679
Target:  5'- cUACUGCUuCAGCAGCAGCUGCuccuGCu -3'
miRNA:   3'- -GUGGUGGuGUCGUUGUCGGCGuu--CGc -5'
29170 5' -56 NC_006150.1 + 213156 0.7 0.776049
Target:  5'- uGCUuuuACUACAGCAGCAaacacuaCCGCAAGCa -3'
miRNA:   3'- gUGG---UGGUGUCGUUGUc------GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 65176 0.7 0.776049
Target:  5'- gGCC-CC-CAGCGccACGGCCGcCGAGCu -3'
miRNA:   3'- gUGGuGGuGUCGU--UGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 107392 0.7 0.776049
Target:  5'- uCGCCACCGuCGGCucACAGuaGCAAGUc -3'
miRNA:   3'- -GUGGUGGU-GUCGu-UGUCggCGUUCGc -5'
29170 5' -56 NC_006150.1 + 2167 0.7 0.785182
Target:  5'- aCAcCCGCaACGGCAcCAGCCGcCAGGCc -3'
miRNA:   3'- -GU-GGUGgUGUCGUuGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 35962 0.7 0.794182
Target:  5'- gCugCACaCGCAGCugcucAGCAGCUGuCAGGUGa -3'
miRNA:   3'- -GugGUG-GUGUCG-----UUGUCGGC-GUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.