miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 107392 0.7 0.776049
Target:  5'- uCGCCACCGuCGGCucACAGuaGCAAGUc -3'
miRNA:   3'- -GUGGUGGU-GUCGu-UGUCggCGUUCGc -5'
29170 5' -56 NC_006150.1 + 2167 0.7 0.785182
Target:  5'- aCAcCCGCaACGGCAcCAGCCGcCAGGCc -3'
miRNA:   3'- -GU-GGUGgUGUCGUuGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 35962 0.7 0.794182
Target:  5'- gCugCACaCGCAGCugcucAGCAGCUGuCAGGUGa -3'
miRNA:   3'- -GugGUG-GUGUCG-----UUGUCGGC-GUUCGC- -5'
29170 5' -56 NC_006150.1 + 89588 0.7 0.80304
Target:  5'- uCACUGCCACAGCcgucgacgauCGGUCGCGGuGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGuu--------GUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 76828 0.7 0.80304
Target:  5'- gCGCCACuCAUAGC-GguGCCGCA-GCa -3'
miRNA:   3'- -GUGGUG-GUGUCGuUguCGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 135541 0.7 0.80304
Target:  5'- uGCCGCCGCGGUggUGGaCGUcgAGGCGg -3'
miRNA:   3'- gUGGUGGUGUCGuuGUCgGCG--UUCGC- -5'
29170 5' -56 NC_006150.1 + 130278 0.73 0.639017
Target:  5'- uGCCGCCACucGCAugAGuuGCAAGg- -3'
miRNA:   3'- gUGGUGGUGu-CGUugUCggCGUUCgc -5'
29170 5' -56 NC_006150.1 + 88670 0.72 0.679273
Target:  5'- aGCCggaACCGCGGCAgacccagcGCGGCCGUccGCGc -3'
miRNA:   3'- gUGG---UGGUGUCGU--------UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 157632 0.71 0.699207
Target:  5'- gCACCACCcucaGCAGCAAUAGCaGCcccAGCa -3'
miRNA:   3'- -GUGGUGG----UGUCGUUGUCGgCGu--UCGc -5'
29170 5' -56 NC_006150.1 + 118779 0.71 0.718923
Target:  5'- uCACgGCCuccgGGCAGCAGCUGCGAGg- -3'
miRNA:   3'- -GUGgUGGug--UCGUUGUCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 75525 0.71 0.738348
Target:  5'- uGCUAUCGCGGUGucACGGCCGCAgcucucauugAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGU--UGUCGGCGU----------UCGC- -5'
29170 5' -56 NC_006150.1 + 141305 0.7 0.757414
Target:  5'- cCACCugcaacauguGCCugAGCAACAgGCCGCAcuCGu -3'
miRNA:   3'- -GUGG----------UGGugUCGUUGU-CGGCGUucGC- -5'
29170 5' -56 NC_006150.1 + 154434 0.73 0.638007
Target:  5'- aUACCACCAgcgacacCAGC-ACAGCUGCAaccAGCa -3'
miRNA:   3'- -GUGGUGGU-------GUCGuUGUCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 2245 0.73 0.62892
Target:  5'- gGCaCACgCGCGGUu-CAGCUGCAGGCGa -3'
miRNA:   3'- gUG-GUG-GUGUCGuuGUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 150046 0.73 0.62791
Target:  5'- gCACCGCCACuugggcuGGCAAguGUugaGCGAGCGa -3'
miRNA:   3'- -GUGGUGGUG-------UCGUUguCGg--CGUUCGC- -5'
29170 5' -56 NC_006150.1 + 72358 0.73 0.608741
Target:  5'- uGCUGCUACAGCGGCGGCUuCAGGUa -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 135777 0.73 0.588629
Target:  5'- cCACCACCGCGGCGGCA-CCau-GGCGa -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUcGGcguUCGC- -5'
29170 5' -56 NC_006150.1 + 131780 0.76 0.435916
Target:  5'- aCACCACCAC-GCAACGGUCGUu-GCa -3'
miRNA:   3'- -GUGGUGGUGuCGUUGUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 130725 0.8 0.281565
Target:  5'- gCACCGCCGCAGCcAUAGCCGCcugacgcauccAGGCu -3'
miRNA:   3'- -GUGGUGGUGUCGuUGUCGGCG-----------UUCGc -5'
29170 5' -56 NC_006150.1 + 8530 0.66 0.948794
Target:  5'- gGCCACCACAGCGAUAaCaGCGAa-- -3'
miRNA:   3'- gUGGUGGUGUCGUUGUcGgCGUUcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.