miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 130725 0.8 0.281565
Target:  5'- gCACCGCCGCAGCcAUAGCCGCcugacgcauccAGGCu -3'
miRNA:   3'- -GUGGUGGUGUCGuUGUCGGCG-----------UUCGc -5'
29170 5' -56 NC_006150.1 + 71225 1.1 0.003373
Target:  5'- aCACCACCACAGCAACAGCCGCAAGCGg -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 152769 0.66 0.925039
Target:  5'- cCACCGCCAUccaaauccaAGuCAGC-GCCGCGuguGGCa -3'
miRNA:   3'- -GUGGUGGUG---------UC-GUUGuCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 847 0.68 0.852749
Target:  5'- gCGCCGgCGguGUAGacgguguGGCCGCGAGCGc -3'
miRNA:   3'- -GUGGUgGUguCGUUg------UCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 157589 0.67 0.908004
Target:  5'- cCACCACaC-CAGCGGCAGCaccaguaGCAccaAGCc -3'
miRNA:   3'- -GUGGUG-GuGUCGUUGUCGg------CGU---UCGc -5'
29170 5' -56 NC_006150.1 + 96220 0.67 0.895499
Target:  5'- aGCUACCACAG-AACAGUuuucUGCGuuGGCGg -3'
miRNA:   3'- gUGGUGGUGUCgUUGUCG----GCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 95979 0.68 0.888909
Target:  5'- -uCUACUuCGGCGGCAgGCCGCGuauGCGg -3'
miRNA:   3'- guGGUGGuGUCGUUGU-CGGCGUu--CGC- -5'
29170 5' -56 NC_006150.1 + 73931 0.69 0.844911
Target:  5'- gGCCGCCGCuugcgAGuCAACGaCCGCAgAGCGg -3'
miRNA:   3'- gUGGUGGUG-----UC-GUUGUcGGCGU-UCGC- -5'
29170 5' -56 NC_006150.1 + 91013 0.69 0.836884
Target:  5'- uGCCGCaACAGCAGCcuCCGCA-GCa -3'
miRNA:   3'- gUGGUGgUGUCGUUGucGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 122646 0.69 0.811747
Target:  5'- uGCCcgaGCCACGGUGACGcGCCGCuGGaCGa -3'
miRNA:   3'- gUGG---UGGUGUCGUUGU-CGGCGuUC-GC- -5'
29170 5' -56 NC_006150.1 + 12400 0.7 0.764924
Target:  5'- aCGCUaauGCCAaauuuauCAGCAGCAuaaaaauGCCGCAGGCa -3'
miRNA:   3'- -GUGG---UGGU-------GUCGUUGU-------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 118779 0.71 0.718923
Target:  5'- uCACgGCCuccgGGCAGCAGCUGCGAGg- -3'
miRNA:   3'- -GUGgUGGug--UCGUUGUCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 154434 0.73 0.638007
Target:  5'- aUACCACCAgcgacacCAGC-ACAGCUGCAaccAGCa -3'
miRNA:   3'- -GUGGUGGU-------GUCGuUGUCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 72358 0.73 0.608741
Target:  5'- uGCUGCUACAGCGGCGGCUuCAGGUa -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 120274 0.67 0.919593
Target:  5'- uGCCACCuCAGCcAUuuuacccuuGGCCGCuuuAAGCGc -3'
miRNA:   3'- gUGGUGGuGUCGuUG---------UCGGCG---UUCGC- -5'
29170 5' -56 NC_006150.1 + 117371 0.67 0.919593
Target:  5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3'
miRNA:   3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 180386 0.67 0.908004
Target:  5'- gGCCGCCaACAGCAcguGC-GCUGCGGGa- -3'
miRNA:   3'- gUGGUGG-UGUCGU---UGuCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 89588 0.7 0.80304
Target:  5'- uCACUGCCACAGCcgucgacgauCGGUCGCGGuGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGuu--------GUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 180909 0.73 0.618825
Target:  5'- gCGCgGCCACAGCGacuuGCGGuuGCGgugacGGCGg -3'
miRNA:   3'- -GUGgUGGUGUCGU----UGUCggCGU-----UCGC- -5'
29170 5' -56 NC_006150.1 + 76828 0.7 0.80304
Target:  5'- gCGCCACuCAUAGC-GguGCCGCA-GCa -3'
miRNA:   3'- -GUGGUG-GUGUCGuUguCGGCGUuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.