miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 70957 0.68 0.8821
Target:  5'- -gUCAuUCGCGGCGaguGCAGCCGCuuGCGg -3'
miRNA:   3'- guGGU-GGUGUCGU---UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 2167 0.7 0.785182
Target:  5'- aCAcCCGCaACGGCAcCAGCCGcCAGGCc -3'
miRNA:   3'- -GU-GGUGgUGUCGUuGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 35962 0.7 0.794182
Target:  5'- gCugCACaCGCAGCugcucAGCAGCUGuCAGGUGa -3'
miRNA:   3'- -GugGUG-GUGUCG-----UUGUCGGC-GUUCGC- -5'
29170 5' -56 NC_006150.1 + 89588 0.7 0.80304
Target:  5'- uCACUGCCACAGCcgucgacgauCGGUCGCGGuGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGuu--------GUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 37227 0.68 0.867102
Target:  5'- gCAUCACCgugccguagaGCAGCAcaugcacACAGCCGUuGGUGu -3'
miRNA:   3'- -GUGGUGG----------UGUCGU-------UGUCGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 88802 0.68 0.860393
Target:  5'- uCGCCGuCgCAUAGcCGGCGGCUGgAGGCGa -3'
miRNA:   3'- -GUGGU-G-GUGUC-GUUGUCGGCgUUCGC- -5'
29170 5' -56 NC_006150.1 + 165274 0.68 0.867837
Target:  5'- aUACCACCACuGcCAACAGCacuGCuacGGUGa -3'
miRNA:   3'- -GUGGUGGUGuC-GUUGUCGg--CGu--UCGC- -5'
29170 5' -56 NC_006150.1 + 125370 0.68 0.87436
Target:  5'- gUACUACCGCAGCGACccGGaccCCGUAgggagauGGCGg -3'
miRNA:   3'- -GUGGUGGUGUCGUUG--UC---GGCGU-------UCGC- -5'
29170 5' -56 NC_006150.1 + 130516 0.73 0.588629
Target:  5'- aGCgGCgGCAGCAGCAGCaGCA-GCGg -3'
miRNA:   3'- gUGgUGgUGUCGUUGUCGgCGUuCGC- -5'
29170 5' -56 NC_006150.1 + 148238 0.68 0.8821
Target:  5'- gCACCAaCAuCAGCAacaACAGCagcaGCAGGCu -3'
miRNA:   3'- -GUGGUgGU-GUCGU---UGUCGg---CGUUCGc -5'
29170 5' -56 NC_006150.1 + 65176 0.7 0.776049
Target:  5'- gGCC-CC-CAGCGccACGGCCGcCGAGCu -3'
miRNA:   3'- gUGGuGGuGUCGU--UGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 180386 0.67 0.908004
Target:  5'- gGCCGCCaACAGCAcguGC-GCUGCGGGa- -3'
miRNA:   3'- gUGGUGG-UGUCGU---UGuCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 117371 0.67 0.919593
Target:  5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3'
miRNA:   3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 120274 0.67 0.919593
Target:  5'- uGCCACCuCAGCcAUuuuacccuuGGCCGCuuuAAGCGc -3'
miRNA:   3'- gUGGUGGuGUCGuUG---------UCGGCG---UUCGC- -5'
29170 5' -56 NC_006150.1 + 119890 0.68 0.881407
Target:  5'- gAUCGCUACAGCAugGccuguuuGCCGCGGGa- -3'
miRNA:   3'- gUGGUGGUGUCGUugU-------CGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 202926 0.66 0.922889
Target:  5'- gUugUGCaACAGCAGCAGCCGCcaccuccuccgcuGGCa -3'
miRNA:   3'- -GugGUGgUGUCGUUGUCGGCGu------------UCGc -5'
29170 5' -56 NC_006150.1 + 45849 0.66 0.924505
Target:  5'- uGCUACCACAGCGAggcauacCGGCUGCu-GUu -3'
miRNA:   3'- gUGGUGGUGUCGUU-------GUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 65740 0.68 0.881407
Target:  5'- aCGCUACCgggccggACAGCGGCAGCUGgAAauGCa -3'
miRNA:   3'- -GUGGUGG-------UGUCGUUGUCGGCgUU--CGc -5'
29170 5' -56 NC_006150.1 + 180909 0.73 0.618825
Target:  5'- gCGCgGCCACAGCGacuuGCGGuuGCGgugacGGCGg -3'
miRNA:   3'- -GUGgUGGUGUCGU----UGUCggCGU-----UCGC- -5'
29170 5' -56 NC_006150.1 + 65809 0.73 0.618825
Target:  5'- gGCCACCACGGCAGa----GCGAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGUUgucggCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.