Results 81 - 100 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29170 | 5' | -56 | NC_006150.1 | + | 63212 | 0.69 | 0.836884 |
Target: 5'- gCGCCucCCACGGCGGCaaaaagaaGGCCGCuGAGUu -3' miRNA: 3'- -GUGGu-GGUGUCGUUG--------UCGGCG-UUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 219756 | 0.69 | 0.836884 |
Target: 5'- aGCgGCgGCGGCAGgaccuggcgUGGCCGCGGGUGg -3' miRNA: 3'- gUGgUGgUGUCGUU---------GUCGGCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 91752 | 0.69 | 0.844911 |
Target: 5'- -uCCACCAUGGcCAGCAGCgCGUgcaugcuggGAGCGu -3' miRNA: 3'- guGGUGGUGUC-GUUGUCG-GCG---------UUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 120274 | 0.67 | 0.919593 |
Target: 5'- uGCCACCuCAGCcAUuuuacccuuGGCCGCuuuAAGCGc -3' miRNA: 3'- gUGGUGGuGUCGuUG---------UCGGCG---UUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 117371 | 0.67 | 0.919593 |
Target: 5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3' miRNA: 3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 180386 | 0.67 | 0.908004 |
Target: 5'- gGCCGCCaACAGCAcguGC-GCUGCGGGa- -3' miRNA: 3'- gUGGUGG-UGUCGU---UGuCGGCGUUCgc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 70957 | 0.68 | 0.8821 |
Target: 5'- -gUCAuUCGCGGCGaguGCAGCCGCuuGCGg -3' miRNA: 3'- guGGU-GGUGUCGU---UGUCGGCGuuCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 148238 | 0.68 | 0.8821 |
Target: 5'- gCACCAaCAuCAGCAacaACAGCagcaGCAGGCu -3' miRNA: 3'- -GUGGUgGU-GUCGU---UGUCGg---CGUUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 68445 | 0.68 | 0.8821 |
Target: 5'- -gUCACCGCAGCAccGCuAGCgGCGucAGCa -3' miRNA: 3'- guGGUGGUGUCGU--UG-UCGgCGU--UCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 119890 | 0.68 | 0.881407 |
Target: 5'- gAUCGCUACAGCAugGccuguuuGCCGCGGGa- -3' miRNA: 3'- gUGGUGGUGUCGUugU-------CGGCGUUCgc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 65740 | 0.68 | 0.881407 |
Target: 5'- aCGCUACCgggccggACAGCGGCAGCUGgAAauGCa -3' miRNA: 3'- -GUGGUGG-------UGUCGUUGUCGGCgUU--CGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 125370 | 0.68 | 0.87436 |
Target: 5'- gUACUACCGCAGCGACccGGaccCCGUAgggagauGGCGg -3' miRNA: 3'- -GUGGUGGUGUCGUUG--UC---GGCGU-------UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 165274 | 0.68 | 0.867837 |
Target: 5'- aUACCACCACuGcCAACAGCacuGCuacGGUGa -3' miRNA: 3'- -GUGGUGGUGuC-GUUGUCGg--CGu--UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 7862 | 0.68 | 0.867837 |
Target: 5'- gUAUUACCACuGCAAUGugagacGCCGUGAGCGu -3' miRNA: 3'- -GUGGUGGUGuCGUUGU------CGGCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 37227 | 0.68 | 0.867102 |
Target: 5'- gCAUCACCgugccguagaGCAGCAcaugcacACAGCCGUuGGUGu -3' miRNA: 3'- -GUGGUGG----------UGUCGU-------UGUCGGCGuUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 88802 | 0.68 | 0.860393 |
Target: 5'- uCGCCGuCgCAUAGcCGGCGGCUGgAGGCGa -3' miRNA: 3'- -GUGGU-G-GUGUC-GUUGUCGGCgUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 70848 | 0.68 | 0.860393 |
Target: 5'- gGCCGCCACuaAGCAGCuaggucccGCCGUccugcAGCGa -3' miRNA: 3'- gUGGUGGUG--UCGUUGu-------CGGCGu----UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 47679 | 0.68 | 0.852749 |
Target: 5'- uCAUCAUCAuCGGCGACGGCgGCc-GCGu -3' miRNA: 3'- -GUGGUGGU-GUCGUUGUCGgCGuuCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 182874 | 0.68 | 0.852749 |
Target: 5'- uCGCCACCccgaggacgacCAGCuAguGCCGCAGGUa -3' miRNA: 3'- -GUGGUGGu----------GUCGuUguCGGCGUUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 197290 | 0.69 | 0.844911 |
Target: 5'- aGCCGuauaCACAGCca-GGCUGCGAGCa -3' miRNA: 3'- gUGGUg---GUGUCGuugUCGGCGUUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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