Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29170 | 5' | -56 | NC_006150.1 | + | 182874 | 0.68 | 0.852749 |
Target: 5'- uCGCCACCccgaggacgacCAGCuAguGCCGCAGGUa -3' miRNA: 3'- -GUGGUGGu----------GUCGuUguCGGCGUUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 202926 | 0.66 | 0.922889 |
Target: 5'- gUugUGCaACAGCAGCAGCCGCcaccuccuccgcuGGCa -3' miRNA: 3'- -GugGUGgUGUCGUUGUCGGCGu------------UCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 45849 | 0.66 | 0.924505 |
Target: 5'- uGCUACCACAGCGAggcauacCGGCUGCu-GUu -3' miRNA: 3'- gUGGUGGUGUCGUU-------GUCGGCGuuCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 8087 | 0.66 | 0.948794 |
Target: 5'- gGCCAgCGCAGUcAguGCCGCccucgcugugAAGCa -3' miRNA: 3'- gUGGUgGUGUCGuUguCGGCG----------UUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 106379 | 0.66 | 0.948375 |
Target: 5'- gGCCugUugGGCAACAGCgucgaugCGCucuacauucagGAGCGc -3' miRNA: 3'- gUGGugGugUCGUUGUCG-------GCG-----------UUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 214875 | 0.66 | 0.944504 |
Target: 5'- cUACUACgGCGGguGCuGCCGCcucGCGc -3' miRNA: 3'- -GUGGUGgUGUCguUGuCGGCGuu-CGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 160150 | 0.66 | 0.944504 |
Target: 5'- aUACUAcCCACGGUGcUGGCCGCcAGUGg -3' miRNA: 3'- -GUGGU-GGUGUCGUuGUCGGCGuUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 303 | 0.66 | 0.944504 |
Target: 5'- uGCCgagGCCGCGGagGACGGCUGCccgggguuGGCGg -3' miRNA: 3'- gUGG---UGGUGUCg-UUGUCGGCGu-------UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 47971 | 0.66 | 0.939985 |
Target: 5'- cCGCguCCGgAGCGaaACAGUCGgAGGCGc -3' miRNA: 3'- -GUGguGGUgUCGU--UGUCGGCgUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 135932 | 0.66 | 0.939985 |
Target: 5'- gGCgGCCACAGCuGACGGUgaagagCGCcAGCa -3' miRNA: 3'- gUGgUGGUGUCG-UUGUCG------GCGuUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 106542 | 0.66 | 0.939985 |
Target: 5'- gGCCGaacgagUCACAGC-ACAGCCgaGCAcccAGCGa -3' miRNA: 3'- gUGGU------GGUGUCGuUGUCGG--CGU---UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 114159 | 0.66 | 0.939985 |
Target: 5'- uGCCcuGgCGCGGCAGCGGUCGCuucacauGGUGc -3' miRNA: 3'- gUGG--UgGUGUCGUUGUCGGCGu------UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 183640 | 0.66 | 0.935235 |
Target: 5'- aACCACCGCuccCAcCAGCCucGCAuGCGg -3' miRNA: 3'- gUGGUGGUGuc-GUuGUCGG--CGUuCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 149843 | 0.69 | 0.836072 |
Target: 5'- aACCACCGUgaacacuguguugAGCAGCAGCaCGCcucGGCGg -3' miRNA: 3'- gUGGUGGUG-------------UCGUUGUCG-GCGu--UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 167131 | 0.69 | 0.836884 |
Target: 5'- uGCCucguuACCACAGgGugAGCCGUAcuGGUGa -3' miRNA: 3'- gUGG-----UGGUGUCgUugUCGGCGU--UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 169176 | 0.69 | 0.836884 |
Target: 5'- aCACCgaACCACuAGCAcCAGCCcUAGGCa -3' miRNA: 3'- -GUGG--UGGUG-UCGUuGUCGGcGUUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 38444 | 0.69 | 0.836884 |
Target: 5'- uCACgACCAUAGCugAACcuCUGCAAGCGc -3' miRNA: 3'- -GUGgUGGUGUCG--UUGucGGCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 90828 | 0.69 | 0.836884 |
Target: 5'- gCACaCAUCACcGCGGguGCCGCAGGa- -3' miRNA: 3'- -GUG-GUGGUGuCGUUguCGGCGUUCgc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 63212 | 0.69 | 0.836884 |
Target: 5'- gCGCCucCCACGGCGGCaaaaagaaGGCCGCuGAGUu -3' miRNA: 3'- -GUGGu-GGUGUCGUUG--------UCGGCG-UUCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 219756 | 0.69 | 0.836884 |
Target: 5'- aGCgGCgGCGGCAGgaccuggcgUGGCCGCGGGUGg -3' miRNA: 3'- gUGgUGgUGUCGUU---------GUCGGCGUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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