miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29171 5' -61.5 NC_006150.1 + 88550 0.66 0.764065
Target:  5'- gCGCGGuuccCUGGUCGCaGCC-AGGCUu -3'
miRNA:   3'- -GCGUCuu--GACCGGCGaCGGcUCCGGc -5'
29171 5' -61.5 NC_006150.1 + 74621 0.66 0.761378
Target:  5'- uGCAGAAC-GGUcacaucgaucuucaCGCUGCUGAGgGUCa -3'
miRNA:   3'- gCGUCUUGaCCG--------------GCGACGGCUC-CGGc -5'
29171 5' -61.5 NC_006150.1 + 150129 0.66 0.745983
Target:  5'- gGCGGAugcauagacgACUGG-UGCcGCCGAGGCg- -3'
miRNA:   3'- gCGUCU----------UGACCgGCGaCGGCUCCGgc -5'
29171 5' -61.5 NC_006150.1 + 112889 0.66 0.745983
Target:  5'- gGCGGAAUuuugUGGCUguuGCUGCUGuGGuuGu -3'
miRNA:   3'- gCGUCUUG----ACCGG---CGACGGCuCCggC- -5'
29171 5' -61.5 NC_006150.1 + 71104 0.67 0.718213
Target:  5'- uGCAGGACggcgGGaCCuaGCUGCUGuaguggcGGCCGu -3'
miRNA:   3'- gCGUCUUGa---CC-GG--CGACGGCu------CCGGC- -5'
29171 5' -61.5 NC_006150.1 + 117905 0.67 0.718213
Target:  5'- uCGguGAGuCUGGCCaCaGCCG-GGUCGg -3'
miRNA:   3'- -GCguCUU-GACCGGcGaCGGCuCCGGC- -5'
29171 5' -61.5 NC_006150.1 + 113111 0.67 0.708815
Target:  5'- gGCGGAaaGCcGGCCGCgaUUGAGGCUGu -3'
miRNA:   3'- gCGUCU--UGaCCGGCGacGGCUCCGGC- -5'
29171 5' -61.5 NC_006150.1 + 837 0.67 0.699359
Target:  5'- uGUAGacgGugUGGCCGCgagcGCUGAGucaGCCGg -3'
miRNA:   3'- gCGUC---UugACCGGCGa---CGGCUC---CGGC- -5'
29171 5' -61.5 NC_006150.1 + 92174 0.67 0.689852
Target:  5'- aGCAuGugUcGGuuGCUGCuCGuGGCCGg -3'
miRNA:   3'- gCGUcUugA-CCggCGACG-GCuCCGGC- -5'
29171 5' -61.5 NC_006150.1 + 150172 0.67 0.689852
Target:  5'- cCGC-GAACUGuGUCGCa-CCGuGGCCGg -3'
miRNA:   3'- -GCGuCUUGAC-CGGCGacGGCuCCGGC- -5'
29171 5' -61.5 NC_006150.1 + 90749 0.67 0.679346
Target:  5'- gCGUGGGccacacaACgGGuuGCUGCgGAGGCUGc -3'
miRNA:   3'- -GCGUCU-------UGaCCggCGACGgCUCCGGC- -5'
29171 5' -61.5 NC_006150.1 + 156671 0.68 0.661107
Target:  5'- uGCAGAAgUGGuCCGCaagacUGCaGAGGCUu -3'
miRNA:   3'- gCGUCUUgACC-GGCG-----ACGgCUCCGGc -5'
29171 5' -61.5 NC_006150.1 + 174894 0.68 0.645688
Target:  5'- aCGcCAGAAgUGGCgcugcucauucaaucUGCcGUCGAGGCCGc -3'
miRNA:   3'- -GC-GUCUUgACCG---------------GCGaCGGCUCCGGC- -5'
29171 5' -61.5 NC_006150.1 + 216664 0.68 0.638932
Target:  5'- uGCAGGggucgcugcugcugACUGGuuGCUcGCCGuGGCgGc -3'
miRNA:   3'- gCGUCU--------------UGACCggCGA-CGGCuCCGgC- -5'
29171 5' -61.5 NC_006150.1 + 70092 0.68 0.632175
Target:  5'- uGCAcGGACUGGCgguggCGCUGCgugGAGGCUu -3'
miRNA:   3'- gCGU-CUUGACCG-----GCGACGg--CUCCGGc -5'
29171 5' -61.5 NC_006150.1 + 130769 0.68 0.632175
Target:  5'- aGCAGGagccGCUGcuGCUGCUGCUGccGCCGc -3'
miRNA:   3'- gCGUCU----UGAC--CGGCGACGGCucCGGC- -5'
29171 5' -61.5 NC_006150.1 + 119098 0.68 0.612874
Target:  5'- uCGUcGAACuugaUGGCgugCGCaGCCGAGGCCa -3'
miRNA:   3'- -GCGuCUUG----ACCG---GCGaCGGCUCCGGc -5'
29171 5' -61.5 NC_006150.1 + 171813 0.69 0.584036
Target:  5'- gCGuCAuuGCUGGCUGCUGUCGcucacGGGCUGu -3'
miRNA:   3'- -GC-GUcuUGACCGGCGACGGC-----UCCGGC- -5'
29171 5' -61.5 NC_006150.1 + 181282 0.7 0.518068
Target:  5'- gGCGGGAgaGGCgGCUGCCcuGGGCgGc -3'
miRNA:   3'- gCGUCUUgaCCGgCGACGGc-UCCGgC- -5'
29171 5' -61.5 NC_006150.1 + 147359 0.7 0.518068
Target:  5'- gGCAcGGCaaaaGCCGCgGCCGAGGCUGa -3'
miRNA:   3'- gCGUcUUGac--CGGCGaCGGCUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.