miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29172 3' -59.4 NC_006150.1 + 36786 0.66 0.850263
Target:  5'- aAGcCGGCGAgaGCGGccUCGCGcAGACUg- -3'
miRNA:   3'- gUC-GCCGCU--CGCCa-AGCGC-UCUGGua -5'
29172 3' -59.4 NC_006150.1 + 88587 0.66 0.826678
Target:  5'- aGGUGG-GGGCG--UCGCGAGGCCc- -3'
miRNA:   3'- gUCGCCgCUCGCcaAGCGCUCUGGua -5'
29172 3' -59.4 NC_006150.1 + 181196 0.66 0.826678
Target:  5'- gCGGUGGCGcgaAGCGaGUUUGCGGcGugCAc -3'
miRNA:   3'- -GUCGCCGC---UCGC-CAAGCGCU-CugGUa -5'
29172 3' -59.4 NC_006150.1 + 109700 0.67 0.810127
Target:  5'- cCAGUGGCGAGuCGGUUaGCaaAGGCCc- -3'
miRNA:   3'- -GUCGCCGCUC-GCCAAgCGc-UCUGGua -5'
29172 3' -59.4 NC_006150.1 + 91815 0.67 0.810127
Target:  5'- aCAGaCGGCGuAGCaGGgaCGCGGGcaACCAg -3'
miRNA:   3'- -GUC-GCCGC-UCG-CCaaGCGCUC--UGGUa -5'
29172 3' -59.4 NC_006150.1 + 219754 0.67 0.784205
Target:  5'- gCAGCGGCG-GCGGcaggaccUgGCGuGGCCGc -3'
miRNA:   3'- -GUCGCCGCuCGCCa------AgCGCuCUGGUa -5'
29172 3' -59.4 NC_006150.1 + 145265 0.67 0.775301
Target:  5'- --cCGGUGAGCgccGGUUCGCGAucgaggagucuGGCCGUg -3'
miRNA:   3'- gucGCCGCUCG---CCAAGCGCU-----------CUGGUA- -5'
29172 3' -59.4 NC_006150.1 + 81424 0.67 0.775301
Target:  5'- gCGGCGGCGgcagaGGgGGUggGCGcGGCCAUu -3'
miRNA:   3'- -GUCGCCGC-----UCgCCAagCGCuCUGGUA- -5'
29172 3' -59.4 NC_006150.1 + 216629 0.68 0.719685
Target:  5'- uGGCGGCu-GCGGUgcUCGgcaGGGACCAg -3'
miRNA:   3'- gUCGCCGcuCGCCA--AGCg--CUCUGGUa -5'
29172 3' -59.4 NC_006150.1 + 114759 0.68 0.713957
Target:  5'- aCGGCGGCuuugccucuucguacGAGCGGUccaGCGAGuagagcGCCAUa -3'
miRNA:   3'- -GUCGCCG---------------CUCGCCAag-CGCUC------UGGUA- -5'
29172 3' -59.4 NC_006150.1 + 106063 0.69 0.690832
Target:  5'- uUAGCGGC-AGCGGgcCGCGuGACUc- -3'
miRNA:   3'- -GUCGCCGcUCGCCaaGCGCuCUGGua -5'
29172 3' -59.4 NC_006150.1 + 170504 0.69 0.690832
Target:  5'- uCGGCGGUGAGCacgagccacGG-UCGCGGGAUUGUu -3'
miRNA:   3'- -GUCGCCGCUCG---------CCaAGCGCUCUGGUA- -5'
29172 3' -59.4 NC_006150.1 + 27106 0.69 0.651766
Target:  5'- uGGCGGCacuuGCGGUaccCGCGGGAUCGg -3'
miRNA:   3'- gUCGCCGcu--CGCCAa--GCGCUCUGGUa -5'
29172 3' -59.4 NC_006150.1 + 92452 0.7 0.622288
Target:  5'- aCAGCGGCGAggagGCGGUgacCGUGucGCCGg -3'
miRNA:   3'- -GUCGCCGCU----CGCCAa--GCGCucUGGUa -5'
29172 3' -59.4 NC_006150.1 + 182612 0.71 0.583109
Target:  5'- aCAGCGaGCGcAGCGGguggUCGCacaggaggGAGGCCGg -3'
miRNA:   3'- -GUCGC-CGC-UCGCCa---AGCG--------CUCUGGUa -5'
29172 3' -59.4 NC_006150.1 + 95486 0.71 0.534905
Target:  5'- uCAGCGGCGGGCuucGGUUgGgGcAGACUAUg -3'
miRNA:   3'- -GUCGCCGCUCG---CCAAgCgC-UCUGGUA- -5'
29172 3' -59.4 NC_006150.1 + 75849 1.05 0.003461
Target:  5'- gCAGCGGCGAGCGGUUCGCGAGACCAUg -3'
miRNA:   3'- -GUCGCCGCUCGCCAAGCGCUCUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.