miRNA: 3'- aGUGCUa---GGGCa--CUUCGCGUA------------CGACG- -5'
miRNA: 3'- -AGUGCUAGggCACuUCGCG------------UACGa---CG- -5'
miRNA: 3'- agUGCUAGGGCAC-U--------------UCGCGUACGaCG- -5'
miRNA: 3'- -AGUGCUAGGGCACUUCGCGUACGACG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29172 | 5' | -53.7 | NC_006150.1 | + | 106719 | 0.69 | 0.928519 |
|
Target: 5'- aCGCGAccgaCUCGgcgGGAGCGCGUuccguguauccgGCUGCa -3' miRNA: 3'- aGUGCUa---GGGCa--CUUCGCGUA------------CGACG- -5' |
|||||||
| 29172 | 5' | -53.7 | NC_006150.1 | + | 139348 | 0.72 | 0.825142 |
|
Target: 5'- aUCACGGUCuuGUGuGGCGUuuguuacgggagGUGCgcugGCg -3' miRNA: 3'- -AGUGCUAGggCACuUCGCG------------UACGa---CG- -5' |
|||||||
| 29172 | 5' | -53.7 | NC_006150.1 | + | 38980 | 0.78 | 0.501142 |
|
Target: 5'- -uGCGAUCCCGUGcAcgagaccaucugccGGCGCAUGCaGCc -3' miRNA: 3'- agUGCUAGGGCAC-U--------------UCGCGUACGaCG- -5' |
|||||||
| 29172 | 5' | -53.7 | NC_006150.1 | + | 75814 | 1.12 | 0.004236 |
|
Target: 5'- gUCACGAUCCCGUGAAGCGCAUGCUGCu -3' miRNA: 3'- -AGUGCUAGGGCACUUCGCGUACGACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home