Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 109188 | 0.71 | 0.866889 |
Target: 5'- cGGGCUguGUUGCGuGCagA-CGAGGCGCa -3' miRNA: 3'- -CCUGG--UAGCGCuCGagUaGUUCCGCG- -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 77702 | 0.71 | 0.859446 |
Target: 5'- uGGACaAUCG-GGGCUCAUUAaacauaagacuGGGCGUg -3' miRNA: 3'- -CCUGgUAGCgCUCGAGUAGU-----------UCCGCG- -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 78296 | 0.71 | 0.859446 |
Target: 5'- uGGCCAUCG-GAGCU-GUCGGuGGUGCu -3' miRNA: 3'- cCUGGUAGCgCUCGAgUAGUU-CCGCG- -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 128277 | 0.71 | 0.859446 |
Target: 5'- gGGG--GUCGCGAuacaGCUCgGUCAGGGCGUc -3' miRNA: 3'- -CCUggUAGCGCU----CGAG-UAGUUCCGCG- -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 135892 | 0.72 | 0.827754 |
Target: 5'- cGGAUC--UGCGAGUcgugCAUCGAGGCGg -3' miRNA: 3'- -CCUGGuaGCGCUCGa---GUAGUUCCGCg -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 2089 | 0.72 | 0.819384 |
Target: 5'- gGGGCCGUCGCGAGCgc------GCGCu -3' miRNA: 3'- -CCUGGUAGCGCUCGaguaguucCGCG- -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 169361 | 0.72 | 0.793318 |
Target: 5'- cGGGCCAacaUCGauCGGGCUCGgacggagggCAAGGCGg -3' miRNA: 3'- -CCUGGU---AGC--GCUCGAGUa--------GUUCCGCg -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 148759 | 0.73 | 0.756636 |
Target: 5'- gGGACCGaggCGgGAGCUgAugcuggggUCAGGGCGUc -3' miRNA: 3'- -CCUGGUa--GCgCUCGAgU--------AGUUCCGCG- -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 216237 | 0.75 | 0.658716 |
Target: 5'- cGACCGUCGUG-GCUCG-CGaaaacAGGCGCc -3' miRNA: 3'- cCUGGUAGCGCuCGAGUaGU-----UCCGCG- -5' |
|||||||
29173 | 5' | -54.1 | NC_006150.1 | + | 85309 | 1.14 | 0.003168 |
Target: 5'- cGGACCAUCGCGAGCUCAUCAAGGCGCu -3' miRNA: 3'- -CCUGGUAGCGCUCGAGUAGUUCCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home