miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29174 5' -47.3 NC_006150.1 + 42238 0.66 0.999971
Target:  5'- gGCGUCAgaugCcgAAucGGuGGUuaGUGUGGCa -3'
miRNA:   3'- aUGCAGUa---GuaUUu-UC-CCA--CACACCG- -5'
29174 5' -47.3 NC_006150.1 + 12908 0.66 0.99996
Target:  5'- gUGCGUUGUCGUugu-GGGUuuUGUGGUu -3'
miRNA:   3'- -AUGCAGUAGUAuuuuCCCAc-ACACCG- -5'
29174 5' -47.3 NC_006150.1 + 32907 0.67 0.99993
Target:  5'- uUGCGaCGUCc----AGGGUccuGUGUGGCa -3'
miRNA:   3'- -AUGCaGUAGuauuuUCCCA---CACACCG- -5'
29174 5' -47.3 NC_006150.1 + 123417 0.67 0.999879
Target:  5'- gAUGUUGUUcUGAucGGGcGUGUGGUa -3'
miRNA:   3'- aUGCAGUAGuAUUuuCCCaCACACCG- -5'
29174 5' -47.3 NC_006150.1 + 153067 0.69 0.999038
Target:  5'- cGCG-CAUCGUAcGAGGGUGgggGaUGGa -3'
miRNA:   3'- aUGCaGUAGUAUuUUCCCACa--C-ACCg -5'
29174 5' -47.3 NC_006150.1 + 160532 0.69 0.999038
Target:  5'- cUGCGUCAUCAauUGGcauAGGGccaugGUG-GGCa -3'
miRNA:   3'- -AUGCAGUAGU--AUUu--UCCCa----CACaCCG- -5'
29174 5' -47.3 NC_006150.1 + 124319 0.69 0.999038
Target:  5'- cGCGUCAggugucuaCAUAAAA-GGUGagGUGGCu -3'
miRNA:   3'- aUGCAGUa-------GUAUUUUcCCACa-CACCG- -5'
29174 5' -47.3 NC_006150.1 + 93738 0.7 0.997493
Target:  5'- -uCGUCGUCAUAGAagucaGGGGUGagGUuuuugcaGGCa -3'
miRNA:   3'- auGCAGUAGUAUUU-----UCCCACa-CA-------CCG- -5'
29174 5' -47.3 NC_006150.1 + 180452 0.7 0.997074
Target:  5'- gACGUCGUCGUAGccgugcgacgcGGGGGaaUGcggcgcgGUGGCg -3'
miRNA:   3'- aUGCAGUAGUAUU-----------UUCCC--ACa------CACCG- -5'
29174 5' -47.3 NC_006150.1 + 148420 0.82 0.660594
Target:  5'- --aGUC-UCAUAGcaguGGGGGUGUGUGGCa -3'
miRNA:   3'- augCAGuAGUAUU----UUCCCACACACCG- -5'
29174 5' -47.3 NC_006150.1 + 87427 1.12 0.017256
Target:  5'- cUACGUCAUCAUAAAAGGGUGUGUGGCa -3'
miRNA:   3'- -AUGCAGUAGUAUUUUCCCACACACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.