miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29175 3' -55.4 NC_006150.1 + 198049 0.66 0.971483
Target:  5'- uCUGUGCaGUGCCCA----CgGGcGCCa -3'
miRNA:   3'- -GACACGcCACGGGUagaaGgCCuUGG- -5'
29175 3' -55.4 NC_006150.1 + 87443 0.66 0.971483
Target:  5'- --aUGCGGUGCCCuuaCUUCaauauaguuaaaUGGGACg -3'
miRNA:   3'- gacACGCCACGGGua-GAAG------------GCCUUGg -5'
29175 3' -55.4 NC_006150.1 + 3602 0.66 0.971483
Target:  5'- cCUGUGCaaUGucaCCCGUUUUCCGGGAa- -3'
miRNA:   3'- -GACACGccAC---GGGUAGAAGGCCUUgg -5'
29175 3' -55.4 NC_006150.1 + 79292 0.66 0.968634
Target:  5'- ---aGCGGaUGCgCAaCUUCUGGAGCa -3'
miRNA:   3'- gacaCGCC-ACGgGUaGAAGGCCUUGg -5'
29175 3' -55.4 NC_006150.1 + 48427 0.66 0.958884
Target:  5'- gCUGUGCGucuccuaucGUGUCUGUgaUUCCGGuAACCc -3'
miRNA:   3'- -GACACGC---------CACGGGUAg-AAGGCC-UUGG- -5'
29175 3' -55.4 NC_006150.1 + 53880 0.66 0.955217
Target:  5'- cCUGUGCaacacGUGCCC----UCgGGAACCu -3'
miRNA:   3'- -GACACGc----CACGGGuagaAGgCCUUGG- -5'
29175 3' -55.4 NC_006150.1 + 88371 0.67 0.942908
Target:  5'- gCUGUGCGGUcCCCggGUUggCCGGGuauGCUc -3'
miRNA:   3'- -GACACGCCAcGGG--UAGaaGGCCU---UGG- -5'
29175 3' -55.4 NC_006150.1 + 173833 0.68 0.923356
Target:  5'- uCUG-GaCGGUGUCaugCUUaCCGGAACCc -3'
miRNA:   3'- -GACaC-GCCACGGguaGAA-GGCCUUGG- -5'
29175 3' -55.4 NC_006150.1 + 46359 0.69 0.887258
Target:  5'- gUG-GCGGUGCUCAUCggaaaacaagUCCGGGc-- -3'
miRNA:   3'- gACaCGCCACGGGUAGa---------AGGCCUugg -5'
29175 3' -55.4 NC_006150.1 + 24521 0.69 0.873479
Target:  5'- gUGUGCGGUGCauaCGgc-UCUGGAuCCa -3'
miRNA:   3'- gACACGCCACGg--GUagaAGGCCUuGG- -5'
29175 3' -55.4 NC_006150.1 + 73192 0.72 0.718739
Target:  5'- gUGUGCGGUGCCCAUgcaUUCCcaguucgaGGAuauAUCa -3'
miRNA:   3'- gACACGCCACGGGUAg--AAGG--------CCU---UGG- -5'
29175 3' -55.4 NC_006150.1 + 87659 1.11 0.003605
Target:  5'- aCUGUGCGGUGCCCAUCUUCCGGAACCc -3'
miRNA:   3'- -GACACGCCACGGGUAGAAGGCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.