miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29176 5' -56.1 NC_006150.1 + 125524 0.66 0.954599
Target:  5'- -aCCCUGGGGAuccguUGUGCGgaacagaGGCUAuCGg -3'
miRNA:   3'- gaGGGACCUCUu----GCGCGUa------CCGAU-GC- -5'
29176 5' -56.1 NC_006150.1 + 111167 0.66 0.954216
Target:  5'- -aCUCUGGAauGGguucaagGCGCGUGUGGCgACGg -3'
miRNA:   3'- gaGGGACCU--CU-------UGCGCGUACCGaUGC- -5'
29176 5' -56.1 NC_006150.1 + 112994 0.67 0.927726
Target:  5'- uUCUggaCUGGGGuuagaGACGCGCAUGGggGCu -3'
miRNA:   3'- gAGG---GACCUC-----UUGCGCGUACCgaUGc -5'
29176 5' -56.1 NC_006150.1 + 149238 0.68 0.886104
Target:  5'- uUCCCgUGGAGGAgGCGgCG-GGCgACGa -3'
miRNA:   3'- gAGGG-ACCUCUUgCGC-GUaCCGaUGC- -5'
29176 5' -56.1 NC_006150.1 + 88259 0.68 0.872243
Target:  5'- -gCCCUGGcggggggcGGAGCGUGCGcucGGCUggGCGg -3'
miRNA:   3'- gaGGGACC--------UCUUGCGCGUa--CCGA--UGC- -5'
29176 5' -56.1 NC_006150.1 + 144063 0.68 0.867923
Target:  5'- uCUCCCucgaUGGGGAugGCGCAacuuacuuuaaaugGGCuUAUGg -3'
miRNA:   3'- -GAGGG----ACCUCUugCGCGUa-------------CCG-AUGC- -5'
29176 5' -56.1 NC_006150.1 + 147692 0.68 0.865003
Target:  5'- --aCC-GGAGAACGCuGCuuuUGGCUGCc -3'
miRNA:   3'- gagGGaCCUCUUGCG-CGu--ACCGAUGc -5'
29176 5' -56.1 NC_006150.1 + 3393 0.69 0.856808
Target:  5'- --aCCUGGuGGACGCGUucgacacgccuugGUGGCgUGCGu -3'
miRNA:   3'- gagGGACCuCUUGCGCG-------------UACCG-AUGC- -5'
29176 5' -56.1 NC_006150.1 + 82207 0.69 0.842106
Target:  5'- gUCCCcGGAGAGCGgGCuggaGGuCUGCu -3'
miRNA:   3'- gAGGGaCCUCUUGCgCGua--CC-GAUGc -5'
29176 5' -56.1 NC_006150.1 + 203680 0.69 0.834102
Target:  5'- -gCCCcGGGGAACGUGUaucgaGUGGCUGa- -3'
miRNA:   3'- gaGGGaCCUCUUGCGCG-----UACCGAUgc -5'
29176 5' -56.1 NC_006150.1 + 88470 1.08 0.004945
Target:  5'- gCUCCCUGGAGAACGCGCAUGGCUACGc -3'
miRNA:   3'- -GAGGGACCUCUUGCGCGUACCGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.