Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29177 | 3' | -57.8 | NC_006150.1 | + | 139386 | 0.71 | 0.623295 |
Target: 5'- uGGCGgaCGGuCCGCCGCCugGGguACGGGAg -3' miRNA: 3'- -CUGUa-GCC-GGCGGUGGugCC--UGCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 110729 | 0.66 | 0.907446 |
Target: 5'- gGACAUCGGuUCGU--CCGCGGGCGu-- -3' miRNA: 3'- -CUGUAGCC-GGCGguGGUGCCUGCuuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 48308 | 0.66 | 0.901388 |
Target: 5'- cGACAUCGGCCuCCGUUuuGGGCGGu- -3' miRNA: 3'- -CUGUAGCCGGcGGUGGugCCUGCUuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 117058 | 0.66 | 0.89511 |
Target: 5'- cGGCGUCcauGGCCGCCAUgcggggCACGucCGAAAc -3' miRNA: 3'- -CUGUAG---CCGGCGGUG------GUGCcuGCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 71038 | 0.66 | 0.881909 |
Target: 5'- -cCGUUGGCCGCCGCCuuuuUGGcACaGAGu -3' miRNA: 3'- cuGUAGCCGGCGGUGGu---GCC-UG-CUUu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 120781 | 0.67 | 0.860553 |
Target: 5'- cGCAgCGGCaCGCCACUAguCGG-CGAAAg -3' miRNA: 3'- cUGUaGCCG-GCGGUGGU--GCCuGCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 23310 | 0.67 | 0.860553 |
Target: 5'- -cCAggGGCCGCCuCCAaGGGCGAu- -3' miRNA: 3'- cuGUagCCGGCGGuGGUgCCUGCUuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 54520 | 0.67 | 0.858318 |
Target: 5'- aACAUCGGCaCGCUccaucucagagagaAUCAUGGAUGAu- -3' miRNA: 3'- cUGUAGCCG-GCGG--------------UGGUGCCUGCUuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 297 | 0.67 | 0.853038 |
Target: 5'- -cCGUCGuGCCGagGCCGCGGAgGAc- -3' miRNA: 3'- cuGUAGC-CGGCggUGGUGCCUgCUuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 106266 | 0.71 | 0.64316 |
Target: 5'- cGGCAaCaGCCGCgGCCGCGGGgGGAGa -3' miRNA: 3'- -CUGUaGcCGGCGgUGGUGCCUgCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 107685 | 0.7 | 0.682729 |
Target: 5'- uGugGUCGGCCGCUgggggaGCgACGGcCGggGa -3' miRNA: 3'- -CugUAGCCGGCGG------UGgUGCCuGCuuU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 31858 | 0.69 | 0.731242 |
Target: 5'- aGGCAgaacacgCGGCCGCCAuCCACcaGGACa--- -3' miRNA: 3'- -CUGUa------GCCGGCGGU-GGUG--CCUGcuuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 26925 | 0.68 | 0.812767 |
Target: 5'- aGACGUCuGCCGCCuccuuCCAUGcaGAUGAGAu -3' miRNA: 3'- -CUGUAGcCGGCGGu----GGUGC--CUGCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 114472 | 0.68 | 0.821159 |
Target: 5'- aGACAuggcUCGGCCGCC-CU-CGGAgGAGu -3' miRNA: 3'- -CUGU----AGCCGGCGGuGGuGCCUgCUUu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 83297 | 0.67 | 0.836652 |
Target: 5'- uGACGcCGGCCGCCuuaagauccuucaGgCGCaGGGCGAAAu -3' miRNA: 3'- -CUGUaGCCGGCGG-------------UgGUG-CCUGCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 130019 | 0.66 | 0.901388 |
Target: 5'- uGACGUCGGUCaCgGCCGCgGGACa--- -3' miRNA: 3'- -CUGUAGCCGGcGgUGGUG-CCUGcuuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 118355 | 0.7 | 0.712021 |
Target: 5'- aGCAg-GGCUuaCACCACGGugGAAAa -3' miRNA: 3'- cUGUagCCGGcgGUGGUGCCugCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 94798 | 0.7 | 0.718781 |
Target: 5'- aGACAaaaaccauuguuccUgGGCCGCCAucUCGCGGAUGAu- -3' miRNA: 3'- -CUGU--------------AgCCGGCGGU--GGUGCCUGCUuu -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 128451 | 0.68 | 0.795528 |
Target: 5'- aGAUggCGGCUuuGCCACCAUGGaaggcgacGCGAAAc -3' miRNA: 3'- -CUGuaGCCGG--CGGUGGUGCC--------UGCUUU- -5' |
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29177 | 3' | -57.8 | NC_006150.1 | + | 114077 | 0.68 | 0.804221 |
Target: 5'- aGGCAcCaGCUGCCGCUGCGG-CGGAAa -3' miRNA: 3'- -CUGUaGcCGGCGGUGGUGCCuGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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