miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29178 5' -57.6 NC_006150.1 + 4114 0.66 0.882349
Target:  5'- aGCGGUGguuuuguccggCUGCGuguGCCUAcgguccgugcGCGCCUGGa -3'
miRNA:   3'- -UGCCGCa----------GACGU---UGGAU----------CGCGGACUa -5'
29178 5' -57.6 NC_006150.1 + 219756 0.66 0.882349
Target:  5'- aGCGGCGgcgGCAggACCUGGCgugGCCgcgGGUg -3'
miRNA:   3'- -UGCCGCagaCGU--UGGAUCG---CGGa--CUA- -5'
29178 5' -57.6 NC_006150.1 + 181370 0.66 0.882349
Target:  5'- -aGGCGuuauaaggUCUGCGugUUGGCGCCg--- -3'
miRNA:   3'- ugCCGC--------AGACGUugGAUCGCGGacua -5'
29178 5' -57.6 NC_006150.1 + 171228 0.66 0.868164
Target:  5'- -gGGUGUCUGUGGCgcGGCGgCCUGGg -3'
miRNA:   3'- ugCCGCAGACGUUGgaUCGC-GGACUa -5'
29178 5' -57.6 NC_006150.1 + 9984 0.67 0.845366
Target:  5'- cUGGCuGUCgGUcaagaggcuuuuGGCCUGGUGCCUGGUc -3'
miRNA:   3'- uGCCG-CAGaCG------------UUGGAUCGCGGACUA- -5'
29178 5' -57.6 NC_006150.1 + 757 0.67 0.837385
Target:  5'- gUGGCGcucgCUGCGccGCCUAGCGUCa--- -3'
miRNA:   3'- uGCCGCa---GACGU--UGGAUCGCGGacua -5'
29178 5' -57.6 NC_006150.1 + 168274 0.68 0.812389
Target:  5'- ----aGUCgGCAGCCUAGCGCCagGAg -3'
miRNA:   3'- ugccgCAGaCGUUGGAUCGCGGa-CUa -5'
29178 5' -57.6 NC_006150.1 + 89677 0.68 0.803732
Target:  5'- -gGGCGg--GcCAACCUAGCGCCUc-- -3'
miRNA:   3'- ugCCGCagaC-GUUGGAUCGCGGAcua -5'
29178 5' -57.6 NC_006150.1 + 214879 0.68 0.785974
Target:  5'- uACGGCGggugCUGCcGCCUcGCGCacgGAg -3'
miRNA:   3'- -UGCCGCa---GACGuUGGAuCGCGga-CUa -5'
29178 5' -57.6 NC_006150.1 + 70963 0.69 0.720071
Target:  5'- cGCGGCGagUGCAGCCgcuuGCGgCUGu- -3'
miRNA:   3'- -UGCCGCagACGUUGGau--CGCgGACua -5'
29178 5' -57.6 NC_006150.1 + 130397 0.73 0.531167
Target:  5'- uCGGCGUCUGCAgaAUCUGGuCGCCcgUGGc -3'
miRNA:   3'- uGCCGCAGACGU--UGGAUC-GCGG--ACUa -5'
29178 5' -57.6 NC_006150.1 + 112325 0.75 0.411978
Target:  5'- cACGGCGUCgGCGACCguggugcGGCGCUUGu- -3'
miRNA:   3'- -UGCCGCAGaCGUUGGa------UCGCGGACua -5'
29178 5' -57.6 NC_006150.1 + 89887 1.05 0.004947
Target:  5'- cACGGCGUCUGCAACCUAGCGCCUGAUu -3'
miRNA:   3'- -UGCCGCAGACGUUGGAUCGCGGACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.