miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29179 3' -57.5 NC_006150.1 + 23758 0.66 0.921642
Target:  5'- gGCGGUCUGCC-GUCAAUCUc--CGAUc -3'
miRNA:   3'- -UGCCGGACGGaCAGUUGGGcauGCUG- -5'
29179 3' -57.5 NC_006150.1 + 105948 0.66 0.921642
Target:  5'- gACGGgagCUGCCaUGUcCAGCCCG-ACGGa -3'
miRNA:   3'- -UGCCg--GACGG-ACA-GUUGGGCaUGCUg -5'
29179 3' -57.5 NC_006150.1 + 107449 0.66 0.921642
Target:  5'- uGCGGUgUGUCUGUaCAACCacaagAUGGCg -3'
miRNA:   3'- -UGCCGgACGGACA-GUUGGgca--UGCUG- -5'
29179 3' -57.5 NC_006150.1 + 208518 0.66 0.921642
Target:  5'- -aGGCCUGUCUGUCuGGCugguugCCGUACu-- -3'
miRNA:   3'- ugCCGGACGGACAG-UUG------GGCAUGcug -5'
29179 3' -57.5 NC_006150.1 + 13359 0.66 0.916154
Target:  5'- aAUGGCUUcucaggguaGCUUGUCGAUCCGcGCGcACg -3'
miRNA:   3'- -UGCCGGA---------CGGACAGUUGGGCaUGC-UG- -5'
29179 3' -57.5 NC_006150.1 + 128923 0.66 0.898356
Target:  5'- gUGGCCUGCgaggCUGUgucUCCGUACGAUc -3'
miRNA:   3'- uGCCGGACG----GACAguuGGGCAUGCUG- -5'
29179 3' -57.5 NC_006150.1 + 116071 0.67 0.85701
Target:  5'- cGCGGUCgcaccuccugcaUGCUgggUGUgGAUCCGUACGAUa -3'
miRNA:   3'- -UGCCGG------------ACGG---ACAgUUGGGCAUGCUG- -5'
29179 3' -57.5 NC_006150.1 + 73066 0.68 0.84478
Target:  5'- cAUGGCUUGUucacacuacgacaauCUGgugcugcgCAACCUGUACGACc -3'
miRNA:   3'- -UGCCGGACG---------------GACa-------GUUGGGCAUGCUG- -5'
29179 3' -57.5 NC_006150.1 + 71270 0.68 0.841649
Target:  5'- gGCGGCCaacggaGCC-GUCAuucgauCCCGUcugGCGGCg -3'
miRNA:   3'- -UGCCGGa-----CGGaCAGUu-----GGGCA---UGCUG- -5'
29179 3' -57.5 NC_006150.1 + 88113 0.69 0.800242
Target:  5'- cACGGCUaUGCCcagGUCGccacuggcgauuGCCCGgACGGCg -3'
miRNA:   3'- -UGCCGG-ACGGa--CAGU------------UGGGCaUGCUG- -5'
29179 3' -57.5 NC_006150.1 + 168382 0.69 0.764508
Target:  5'- cCGGCCUGCUggUGUUGGCCCGaguccACGuGCg -3'
miRNA:   3'- uGCCGGACGG--ACAGUUGGGCa----UGC-UG- -5'
29179 3' -57.5 NC_006150.1 + 70280 0.7 0.717424
Target:  5'- gGCGGCgCUGCgCcGUCAcgccggACCCGUgccuuGCGGCa -3'
miRNA:   3'- -UGCCG-GACG-GaCAGU------UGGGCA-----UGCUG- -5'
29179 3' -57.5 NC_006150.1 + 215938 0.71 0.668627
Target:  5'- aGCGGCCUGaagcagCAucGCCUGUACGGCg -3'
miRNA:   3'- -UGCCGGACggaca-GU--UGGGCAUGCUG- -5'
29179 3' -57.5 NC_006150.1 + 114709 0.72 0.589481
Target:  5'- gGCGGCCgaGCCaUGUCucGCCCG-ACGAg -3'
miRNA:   3'- -UGCCGGa-CGG-ACAGu-UGGGCaUGCUg -5'
29179 3' -57.5 NC_006150.1 + 69474 0.72 0.589481
Target:  5'- gACGGCCUGUCacggcagucaUGUCuAGCUCGaGCGGCa -3'
miRNA:   3'- -UGCCGGACGG----------ACAG-UUGGGCaUGCUG- -5'
29179 3' -57.5 NC_006150.1 + 91937 1.08 0.003643
Target:  5'- cACGGCCUGCCUGUCAACCCGUACGACc -3'
miRNA:   3'- -UGCCGGACGGACAGUUGGGCAUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.