miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29179 5' -61.8 NC_006150.1 + 88418 0.66 0.75673
Target:  5'- aCgGCCGc-GCUGGGuCUGCcGCGGUUCc -3'
miRNA:   3'- -GgUGGCauCGGCCC-GACGcCGUCGAG- -5'
29179 5' -61.8 NC_006150.1 + 180166 0.66 0.751301
Target:  5'- aCCGCCGUGGCUgugcgaaccgcaauaGGcGUUGCaGUAGCcaUCg -3'
miRNA:   3'- -GGUGGCAUCGG---------------CC-CGACGcCGUCG--AG- -5'
29179 5' -61.8 NC_006150.1 + 35133 0.66 0.729269
Target:  5'- gCCGCCaUAGgUGGG-UGCGGUGGCa- -3'
miRNA:   3'- -GGUGGcAUCgGCCCgACGCCGUCGag -5'
29179 5' -61.8 NC_006150.1 + 81441 0.67 0.701137
Target:  5'- gUC-CCGU-GCCagaugGGGCgGCGGCGGCa- -3'
miRNA:   3'- -GGuGGCAuCGG-----CCCGaCGCCGUCGag -5'
29179 5' -61.8 NC_006150.1 + 114830 0.67 0.691646
Target:  5'- uCCACgGcgAGCgGGGCUgGCaGCAGC-Ca -3'
miRNA:   3'- -GGUGgCa-UCGgCCCGA-CGcCGUCGaG- -5'
29179 5' -61.8 NC_006150.1 + 90886 0.67 0.688789
Target:  5'- gCUGCUGUgguugcggcgaagcAGCCuGGGgUGCGGCAGUc- -3'
miRNA:   3'- -GGUGGCA--------------UCGG-CCCgACGCCGUCGag -5'
29179 5' -61.8 NC_006150.1 + 293 0.67 0.672539
Target:  5'- gUCGCCGUcguGCCGaGGCcGCGGaggaCGGCUg -3'
miRNA:   3'- -GGUGGCAu--CGGC-CCGaCGCC----GUCGAg -5'
29179 5' -61.8 NC_006150.1 + 2653 0.67 0.665821
Target:  5'- gUCGCCGUcgcugucaguaucagAGCUGguaguggaugaauGGCgacaaggGCGGCGGCUCu -3'
miRNA:   3'- -GGUGGCA---------------UCGGC-------------CCGa------CGCCGUCGAG- -5'
29179 5' -61.8 NC_006150.1 + 125703 0.67 0.662938
Target:  5'- gCgACCGUcaGGCCGGcGUcGCGcagauaggugaGCAGCUCg -3'
miRNA:   3'- -GgUGGCA--UCGGCC-CGaCGC-----------CGUCGAG- -5'
29179 5' -61.8 NC_006150.1 + 165528 0.67 0.653316
Target:  5'- gUCACCGUAGCaGuGCUGUuGGCAGUg- -3'
miRNA:   3'- -GGUGGCAUCGgCcCGACG-CCGUCGag -5'
29179 5' -61.8 NC_006150.1 + 862 0.68 0.643678
Target:  5'- uUCAgCGUGcGCCGGGC-GCcGGCGGUg- -3'
miRNA:   3'- -GGUgGCAU-CGGCCCGaCG-CCGUCGag -5'
29179 5' -61.8 NC_006150.1 + 105695 0.68 0.624385
Target:  5'- cUCAUCc--GUCGGGCUGgacaUGGCAGCUCc -3'
miRNA:   3'- -GGUGGcauCGGCCCGAC----GCCGUCGAG- -5'
29179 5' -61.8 NC_006150.1 + 69638 0.69 0.566829
Target:  5'- uCCACCGUGGuggugcgcuCCGucaacaucccacGGUUGCuGCGGCUCa -3'
miRNA:   3'- -GGUGGCAUC---------GGC------------CCGACGcCGUCGAG- -5'
29179 5' -61.8 NC_006150.1 + 71085 0.69 0.547909
Target:  5'- gCUGCUGUAGUgGcGGCcGUGGCAGCg- -3'
miRNA:   3'- -GGUGGCAUCGgC-CCGaCGCCGUCGag -5'
29179 5' -61.8 NC_006150.1 + 192264 0.69 0.538522
Target:  5'- -gACCGUGGUCGGGUUGgaGGCcGCa- -3'
miRNA:   3'- ggUGGCAUCGGCCCGACg-CCGuCGag -5'
29179 5' -61.8 NC_006150.1 + 197290 0.7 0.519922
Target:  5'- -aGCCGUauacacAGCCaGGCUGCGaGCAaGUUCa -3'
miRNA:   3'- ggUGGCA------UCGGcCCGACGC-CGU-CGAG- -5'
29179 5' -61.8 NC_006150.1 + 88497 0.7 0.519922
Target:  5'- uCCGCCccccGCCaGGGCUgcGCGGCcGCUCc -3'
miRNA:   3'- -GGUGGcau-CGG-CCCGA--CGCCGuCGAG- -5'
29179 5' -61.8 NC_006150.1 + 88147 0.72 0.398488
Target:  5'- cCCGCCGcgGGCUGGaucCUGCGGUauggGGCUCc -3'
miRNA:   3'- -GGUGGCa-UCGGCCc--GACGCCG----UCGAG- -5'
29179 5' -61.8 NC_006150.1 + 220426 0.74 0.323653
Target:  5'- cCCAaCGcAGCCGcaGCUGCGGCAGCUa -3'
miRNA:   3'- -GGUgGCaUCGGCc-CGACGCCGUCGAg -5'
29179 5' -61.8 NC_006150.1 + 65742 0.74 0.310002
Target:  5'- gCUACCG-GGCCGGaCaGCGGCAGCUg -3'
miRNA:   3'- -GGUGGCaUCGGCCcGaCGCCGUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.