miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2918 3' -48.1 NC_001493.1 + 110605 0.66 0.999009
Target:  5'- gUGACGgguCAU-CGACCCGAGgUGcUCGc -3'
miRNA:   3'- aACUGUu--GUAuGCUGGGUUCgAU-AGC- -5'
2918 3' -48.1 NC_001493.1 + 88897 0.66 0.998785
Target:  5'- gUGAUAACAU-CGAgC--GGCUGUCGg -3'
miRNA:   3'- aACUGUUGUAuGCUgGguUCGAUAGC- -5'
2918 3' -48.1 NC_001493.1 + 33459 0.66 0.998518
Target:  5'- uUUGAucuCAACGUccAUGGCUCGAGCUcUCGu -3'
miRNA:   3'- -AACU---GUUGUA--UGCUGGGUUCGAuAGC- -5'
2918 3' -48.1 NC_001493.1 + 86080 0.66 0.998518
Target:  5'- -cGAC-ACGUACGACCaauuGUUAUCc -3'
miRNA:   3'- aaCUGuUGUAUGCUGGguu-CGAUAGc -5'
2918 3' -48.1 NC_001493.1 + 53551 0.67 0.997406
Target:  5'- aUGAUAgGCAggaacGCGGCCgucucgugCAAGCUAUCGa -3'
miRNA:   3'- aACUGU-UGUa----UGCUGG--------GUUCGAUAGC- -5'
2918 3' -48.1 NC_001493.1 + 69464 0.67 0.995671
Target:  5'- aUGACAGCggucuGUGCGACCuCGGGaggAUCa -3'
miRNA:   3'- aACUGUUG-----UAUGCUGG-GUUCga-UAGc -5'
2918 3' -48.1 NC_001493.1 + 59795 0.67 0.994917
Target:  5'- -cGACAGCGUAUGA-CgGGGCcGUCGa -3'
miRNA:   3'- aaCUGUUGUAUGCUgGgUUCGaUAGC- -5'
2918 3' -48.1 NC_001493.1 + 90906 0.69 0.987875
Target:  5'- -cGGgGugGaACGugCCAAGUUAUCGg -3'
miRNA:   3'- aaCUgUugUaUGCugGGUUCGAUAGC- -5'
2918 3' -48.1 NC_001493.1 + 118388 0.69 0.986187
Target:  5'- cUUGGCGACcgAUGAcCCCGGGUcgAUCGc -3'
miRNA:   3'- -AACUGUUGuaUGCU-GGGUUCGa-UAGC- -5'
2918 3' -48.1 NC_001493.1 + 4180 0.69 0.986187
Target:  5'- -gGACGAUccauuccgAUGCGAUCCAGGCgaguuUCGa -3'
miRNA:   3'- aaCUGUUG--------UAUGCUGGGUUCGau---AGC- -5'
2918 3' -48.1 NC_001493.1 + 103840 0.69 0.986187
Target:  5'- cUGugAGCAguCGACCCAGGCa---- -3'
miRNA:   3'- aACugUUGUauGCUGGGUUCGauagc -5'
2918 3' -48.1 NC_001493.1 + 99659 0.69 0.986187
Target:  5'- cUGACcGCGaGCGAgCCCAGGCUAc-- -3'
miRNA:   3'- aACUGuUGUaUGCU-GGGUUCGAUagc -5'
2918 3' -48.1 NC_001493.1 + 2834 0.69 0.986187
Target:  5'- cUUGGCGACcgAUGAcCCCGGGUcgAUCGc -3'
miRNA:   3'- -AACUGUUGuaUGCU-GGGUUCGa-UAGC- -5'
2918 3' -48.1 NC_001493.1 + 59809 0.7 0.974934
Target:  5'- aUUGACGACugugGCGccgauggguucACgCAAGCUAUCGg -3'
miRNA:   3'- -AACUGUUGua--UGC-----------UGgGUUCGAUAGC- -5'
2918 3' -48.1 NC_001493.1 + 62214 0.7 0.972051
Target:  5'- ---cCAACGggcgACGACCgGGGCUAUCa -3'
miRNA:   3'- aacuGUUGUa---UGCUGGgUUCGAUAGc -5'
2918 3' -48.1 NC_001493.1 + 93051 0.71 0.949642
Target:  5'- gUGACAcacGCAUACGcCCgGAGCUcacgGUCGu -3'
miRNA:   3'- aACUGU---UGUAUGCuGGgUUCGA----UAGC- -5'
2918 3' -48.1 NC_001493.1 + 106757 0.72 0.92367
Target:  5'- gUGGCuaAACuggGCGACCUggGCUGUUGu -3'
miRNA:   3'- aACUG--UUGua-UGCUGGGuuCGAUAGC- -5'
2918 3' -48.1 NC_001493.1 + 67619 0.74 0.867902
Target:  5'- aUGACAACGagAUGACCCGGG-UAUCGc -3'
miRNA:   3'- aACUGUUGUa-UGCUGGGUUCgAUAGC- -5'
2918 3' -48.1 NC_001493.1 + 92087 0.77 0.746152
Target:  5'- -aGACGACAUGCGuuaCCGAGCcGUCGc -3'
miRNA:   3'- aaCUGUUGUAUGCug-GGUUCGaUAGC- -5'
2918 3' -48.1 NC_001493.1 + 44373 1.08 0.01518
Target:  5'- uUUGACAACAUACGACCCAAGCUAUCGa -3'
miRNA:   3'- -AACUGUUGUAUGCUGGGUUCGAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.