miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29180 3' -53.9 NC_006150.1 + 138743 0.66 0.978001
Target:  5'- cACCGACcaugGCAUGCU-GUGCUcCAUCu-- -3'
miRNA:   3'- -UGGCUG----UGUACGAcCGCGA-GUAGuua -5'
29180 3' -53.9 NC_006150.1 + 75790 0.66 0.967005
Target:  5'- uGCUGGauaaggaGCA-GCUGGCGCUCAaggUCAc- -3'
miRNA:   3'- -UGGCUg------UGUaCGACCGCGAGU---AGUua -5'
29180 3' -53.9 NC_006150.1 + 58831 0.66 0.963737
Target:  5'- cACCGGCGCcgGCgggcucgaGGCGgUCAUgCAGg -3'
miRNA:   3'- -UGGCUGUGuaCGa-------CCGCgAGUA-GUUa -5'
29180 3' -53.9 NC_006150.1 + 109616 0.67 0.952597
Target:  5'- cGCCG-CACAcGCUGGCuaUCAUgGGa -3'
miRNA:   3'- -UGGCuGUGUaCGACCGcgAGUAgUUa -5'
29180 3' -53.9 NC_006150.1 + 123829 0.67 0.952597
Target:  5'- aGCCGAaugcgcagcaCACAUGCUGaCGUcggUCAUCAAc -3'
miRNA:   3'- -UGGCU----------GUGUACGACcGCG---AGUAGUUa -5'
29180 3' -53.9 NC_006150.1 + 90549 0.67 0.944011
Target:  5'- gGCCGuugucguCGC-UGCUGGCGC-CAUCu-- -3'
miRNA:   3'- -UGGCu------GUGuACGACCGCGaGUAGuua -5'
29180 3' -53.9 NC_006150.1 + 216634 0.68 0.93936
Target:  5'- cGCCGugGCGgcUGC-GGUGCUCggCAGg -3'
miRNA:   3'- -UGGCugUGU--ACGaCCGCGAGuaGUUa -5'
29180 3' -53.9 NC_006150.1 + 136200 0.69 0.906365
Target:  5'- cGCCGGucCAgAcucUGCUGGCGCUCuUCAc- -3'
miRNA:   3'- -UGGCU--GUgU---ACGACCGCGAGuAGUua -5'
29180 3' -53.9 NC_006150.1 + 142605 0.7 0.857132
Target:  5'- gACUGuCACG-GCUGGUGCUCAagGAUg -3'
miRNA:   3'- -UGGCuGUGUaCGACCGCGAGUagUUA- -5'
29180 3' -53.9 NC_006150.1 + 92120 0.7 0.857132
Target:  5'- aGCUGACGCA-GCUGGUuCUCGUCc-- -3'
miRNA:   3'- -UGGCUGUGUaCGACCGcGAGUAGuua -5'
29180 3' -53.9 NC_006150.1 + 149995 0.7 0.857132
Target:  5'- uGCCGaACGCcaccccGCUGGCGCUCccGUCAc- -3'
miRNA:   3'- -UGGC-UGUGua----CGACCGCGAG--UAGUua -5'
29180 3' -53.9 NC_006150.1 + 150105 0.71 0.824334
Target:  5'- cGCCGAgGCGUGCUGcUGCUCAacaCAGUg -3'
miRNA:   3'- -UGGCUgUGUACGACcGCGAGUa--GUUA- -5'
29180 3' -53.9 NC_006150.1 + 92408 1.05 0.009885
Target:  5'- aACCGACACAUGCUGGCGCUCAUCAAUc -3'
miRNA:   3'- -UGGCUGUGUACGACCGCGAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.