miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29180 5' -53.5 NC_006150.1 + 185472 0.66 0.987967
Target:  5'- aCAUGGACGcuGAACUuuGCUGCGa--- -3'
miRNA:   3'- cGUACCUGCu-CUUGGu-CGACGCaguc -5'
29180 5' -53.5 NC_006150.1 + 220761 0.66 0.987967
Target:  5'- aGCGUGGugG-GAGCUccgggAGCaUGUGUgGGa -3'
miRNA:   3'- -CGUACCugCuCUUGG-----UCG-ACGCAgUC- -5'
29180 5' -53.5 NC_006150.1 + 218592 0.66 0.980887
Target:  5'- uGCA-GGAgGGGGACaAGgUGUGUCGGu -3'
miRNA:   3'- -CGUaCCUgCUCUUGgUCgACGCAGUC- -5'
29180 5' -53.5 NC_006150.1 + 94233 0.66 0.980887
Target:  5'- aGUAcUGGGCGAGGgaGCCGGUgGCGUa-- -3'
miRNA:   3'- -CGU-ACCUGCUCU--UGGUCGaCGCAguc -5'
29180 5' -53.5 NC_006150.1 + 182288 0.67 0.979602
Target:  5'- ---cGGcCGGGuAACCGGCccgcccagguccaggUGCGUCAGg -3'
miRNA:   3'- cguaCCuGCUC-UUGGUCG---------------ACGCAGUC- -5'
29180 5' -53.5 NC_006150.1 + 92160 0.67 0.973811
Target:  5'- -gAUuGAUGAGcGCCAGCaUGUGUCGGu -3'
miRNA:   3'- cgUAcCUGCUCuUGGUCG-ACGCAGUC- -5'
29180 5' -53.5 NC_006150.1 + 88590 0.67 0.970792
Target:  5'- cGCAggUGGgggcgucGCGAGGcCCAGCUGgGgugCAGg -3'
miRNA:   3'- -CGU--ACC-------UGCUCUuGGUCGACgCa--GUC- -5'
29180 5' -53.5 NC_006150.1 + 155737 0.67 0.968143
Target:  5'- -gAUGGAUGAGGACCgugaaGGUguauugUGCGUUGGg -3'
miRNA:   3'- cgUACCUGCUCUUGG-----UCG------ACGCAGUC- -5'
29180 5' -53.5 NC_006150.1 + 168420 0.68 0.961654
Target:  5'- aGCAgUGGACGAGuuggcuAGCCGGCaGCG-CAc -3'
miRNA:   3'- -CGU-ACCUGCUC------UUGGUCGaCGCaGUc -5'
29180 5' -53.5 NC_006150.1 + 139473 0.68 0.961654
Target:  5'- aGCGUGG--GAGAGCCGGgUGCGg--- -3'
miRNA:   3'- -CGUACCugCUCUUGGUCgACGCaguc -5'
29180 5' -53.5 NC_006150.1 + 27908 0.68 0.958088
Target:  5'- cGCAUGGACuaacauGGACCAGUaucggcgGCGUUAa -3'
miRNA:   3'- -CGUACCUGcu----CUUGGUCGa------CGCAGUc -5'
29180 5' -53.5 NC_006150.1 + 122743 0.68 0.954301
Target:  5'- -gGUGGGCGAGGACUgcugggaauGCUGUG-CGGa -3'
miRNA:   3'- cgUACCUGCUCUUGGu--------CGACGCaGUC- -5'
29180 5' -53.5 NC_006150.1 + 133664 0.69 0.94158
Target:  5'- aGCG-GGACGAGAGCgaAGUgggGCGUCc- -3'
miRNA:   3'- -CGUaCCUGCUCUUGg-UCGa--CGCAGuc -5'
29180 5' -53.5 NC_006150.1 + 118808 0.7 0.897365
Target:  5'- aGCAgUGGAUGAG-GCCAcGCUccaugGCGUCGGc -3'
miRNA:   3'- -CGU-ACCUGCUCuUGGU-CGA-----CGCAGUC- -5'
29180 5' -53.5 NC_006150.1 + 181874 0.72 0.825513
Target:  5'- gGCAUGGGCGGGAAgaGGCgUGCGaugacuagucaucagUCAGg -3'
miRNA:   3'- -CGUACCUGCUCUUggUCG-ACGC---------------AGUC- -5'
29180 5' -53.5 NC_006150.1 + 57239 0.72 0.82213
Target:  5'- cGCAccGACGAuGACguGCUGUGUCGGg -3'
miRNA:   3'- -CGUacCUGCUcUUGguCGACGCAGUC- -5'
29180 5' -53.5 NC_006150.1 + 181772 0.76 0.639825
Target:  5'- aGCAUGGuggcGCGAGGGCUAGCUGCa---- -3'
miRNA:   3'- -CGUACC----UGCUCUUGGUCGACGcaguc -5'
29180 5' -53.5 NC_006150.1 + 92369 1.1 0.005951
Target:  5'- aGCAUGGACGAGAACCAGCUGCGUCAGc -3'
miRNA:   3'- -CGUACCUGCUCUUGGUCGACGCAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.