miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29181 3' -61.9 NC_006150.1 + 88720 0.66 0.787137
Target:  5'- gCCGGcUgCCUACCcgacgucggagcGCUagggCGGCCCGGACg -3'
miRNA:   3'- -GGCUuAgGGGUGG------------CGG----GCCGGGUCUG- -5'
29181 3' -61.9 NC_006150.1 + 181508 0.66 0.787137
Target:  5'- cCCGcccUCCgCGuCCGCCuCGGCaCCAcGACa -3'
miRNA:   3'- -GGCuu-AGGgGU-GGCGG-GCCG-GGU-CUG- -5'
29181 3' -61.9 NC_006150.1 + 71179 0.66 0.778553
Target:  5'- aCGAucgCUCCGCCGCCCuuuccaccGCCCAcACc -3'
miRNA:   3'- gGCUua-GGGGUGGCGGGc-------CGGGUcUG- -5'
29181 3' -61.9 NC_006150.1 + 174345 0.66 0.752146
Target:  5'- -----gCCCCGCCGCCCuGGCCgAa-- -3'
miRNA:   3'- ggcuuaGGGGUGGCGGG-CCGGgUcug -5'
29181 3' -61.9 NC_006150.1 + 172381 0.66 0.743151
Target:  5'- aCCGAGUCCCgcgcguaucuuuCACUcuggcaCCUGGCCCucuGGCa -3'
miRNA:   3'- -GGCUUAGGG------------GUGGc-----GGGCCGGGu--CUG- -5'
29181 3' -61.9 NC_006150.1 + 110873 0.66 0.743151
Target:  5'- cCCGAGUUaCCCACUuacgauGCCgCuGUCCAGGCg -3'
miRNA:   3'- -GGCUUAG-GGGUGG------CGG-GcCGGGUCUG- -5'
29181 3' -61.9 NC_006150.1 + 140167 0.66 0.743151
Target:  5'- aCGGAgaCCCACCcUCUGGCCCAaGAUc -3'
miRNA:   3'- gGCUUagGGGUGGcGGGCCGGGU-CUG- -5'
29181 3' -61.9 NC_006150.1 + 71874 0.66 0.742247
Target:  5'- -aGGAUCCUCcccguguACCGCCCGcGCCgAG-Cg -3'
miRNA:   3'- ggCUUAGGGG-------UGGCGGGC-CGGgUCuG- -5'
29181 3' -61.9 NC_006150.1 + 132443 0.66 0.741341
Target:  5'- gCCGAggaguuuGUCUCCGCgGUcgcggcuCUGGCCCAGgACg -3'
miRNA:   3'- -GGCU-------UAGGGGUGgCG-------GGCCGGGUC-UG- -5'
29181 3' -61.9 NC_006150.1 + 1732 0.67 0.715691
Target:  5'- aCCGGcaCCgCagACCGCCuCaGCCCAGACc -3'
miRNA:   3'- -GGCUuaGGgG--UGGCGG-GcCGGGUCUG- -5'
29181 3' -61.9 NC_006150.1 + 707 0.67 0.687675
Target:  5'- uUGAcgCCCC-CCGCCgCGaccCCCGGGCc -3'
miRNA:   3'- gGCUuaGGGGuGGCGG-GCc--GGGUCUG- -5'
29181 3' -61.9 NC_006150.1 + 135785 0.68 0.659299
Target:  5'- cUCGAcGUCCaCCACCGCggCGGCaCCAuGGCg -3'
miRNA:   3'- -GGCU-UAGG-GGUGGCGg-GCCG-GGU-CUG- -5'
29181 3' -61.9 NC_006150.1 + 118167 0.68 0.659299
Target:  5'- gCGAggcGUgCCgACCGaCCCGGCuguggCCAGACu -3'
miRNA:   3'- gGCU---UAgGGgUGGC-GGGCCG-----GGUCUG- -5'
29181 3' -61.9 NC_006150.1 + 169796 0.68 0.630753
Target:  5'- -aGAcUCUgCACCGaCCCGGUgauCCAGACu -3'
miRNA:   3'- ggCUuAGGgGUGGC-GGGCCG---GGUCUG- -5'
29181 3' -61.9 NC_006150.1 + 182286 0.68 0.62123
Target:  5'- gCCGggUaaCCGgcCCGCCCaGGUCCAGGu -3'
miRNA:   3'- -GGCuuAggGGU--GGCGGG-CCGGGUCUg -5'
29181 3' -61.9 NC_006150.1 + 565 0.7 0.545799
Target:  5'- gCGAAaCCCgaGCCGCCCGGCU--GACu -3'
miRNA:   3'- gGCUUaGGGg-UGGCGGGCCGGguCUG- -5'
29181 3' -61.9 NC_006150.1 + 182333 0.7 0.509131
Target:  5'- cCCGAGaCCCCAUgcugUGCCCGGCCUc--- -3'
miRNA:   3'- -GGCUUaGGGGUG----GCGGGCCGGGucug -5'
29181 3' -61.9 NC_006150.1 + 66002 0.71 0.481442
Target:  5'- uUGGAUCUgcauuuccagcugCCGCUGUCCGGCCCGGuaGCg -3'
miRNA:   3'- gGCUUAGG-------------GGUGGCGGGCCGGGUC--UG- -5'
29181 3' -61.9 NC_006150.1 + 58566 0.72 0.447684
Target:  5'- cUCGGAUCCCUccugcaugACCGCCuCGaGCCCGccGGCg -3'
miRNA:   3'- -GGCUUAGGGG--------UGGCGG-GC-CGGGU--CUG- -5'
29181 3' -61.9 NC_006150.1 + 148054 0.72 0.435889
Target:  5'- gCCGAGcgcagucguggugCCCuCACCGUCCaGGCaCCGGACg -3'
miRNA:   3'- -GGCUUa------------GGG-GUGGCGGG-CCG-GGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.