miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29181 5' -56 NC_006150.1 + 69656 0.66 0.964861
Target:  5'- uCGGCg-CGGAcgugcgacuCCACcGUGGUGGUGCGc -3'
miRNA:   3'- -GCUGgaGUCU---------GGUGcCACCACUACGC- -5'
29181 5' -56 NC_006150.1 + 152399 0.66 0.964861
Target:  5'- gCGGCCaCGGcCUGCGG-GGUG-UGCGg -3'
miRNA:   3'- -GCUGGaGUCuGGUGCCaCCACuACGC- -5'
29181 5' -56 NC_006150.1 + 214815 0.66 0.964861
Target:  5'- gCGACgaC-GAUgAUGGUGGUGGUGgCGg -3'
miRNA:   3'- -GCUGgaGuCUGgUGCCACCACUAC-GC- -5'
29181 5' -56 NC_006150.1 + 48501 0.66 0.961592
Target:  5'- cCGAUaUCAGAUUugGcGUGGacaugaUGAUGCGg -3'
miRNA:   3'- -GCUGgAGUCUGGugC-CACC------ACUACGC- -5'
29181 5' -56 NC_006150.1 + 51451 0.66 0.946425
Target:  5'- uCGACCUucCAGACa--GGUGGUGcUGUu -3'
miRNA:   3'- -GCUGGA--GUCUGgugCCACCACuACGc -5'
29181 5' -56 NC_006150.1 + 171990 0.67 0.93754
Target:  5'- uGACCU-GGAUCugGGgGGcuugcUGAUGCGg -3'
miRNA:   3'- gCUGGAgUCUGGugCCaCC-----ACUACGC- -5'
29181 5' -56 NC_006150.1 + 141052 0.67 0.932765
Target:  5'- gCGGCCuguugcUCAGGCaCAUguugcaGGUGGUGGUGUu -3'
miRNA:   3'- -GCUGG------AGUCUG-GUG------CCACCACUACGc -5'
29181 5' -56 NC_006150.1 + 87624 0.67 0.932765
Target:  5'- aCGACUUCAGAaaACGGU-GUGcacAUGCGc -3'
miRNA:   3'- -GCUGGAGUCUggUGCCAcCAC---UACGC- -5'
29181 5' -56 NC_006150.1 + 658 0.67 0.932765
Target:  5'- gGGCCgacagggGGACgGCGGUGGUGucUGCc -3'
miRNA:   3'- gCUGGag-----UCUGgUGCCACCACu-ACGc -5'
29181 5' -56 NC_006150.1 + 87926 0.68 0.893094
Target:  5'- gGGCCUCGcaGCCuCGGUGGgGggGCGg -3'
miRNA:   3'- gCUGGAGUc-UGGuGCCACCaCuaCGC- -5'
29181 5' -56 NC_006150.1 + 147079 0.69 0.879799
Target:  5'- uCGACCUUAGGgUgguCGuGUGGUGGUGgGg -3'
miRNA:   3'- -GCUGGAGUCUgGu--GC-CACCACUACgC- -5'
29181 5' -56 NC_006150.1 + 198407 0.69 0.858319
Target:  5'- gGAUUUCAG-CCuaggACGGUGGUGGgccGCGg -3'
miRNA:   3'- gCUGGAGUCuGG----UGCCACCACUa--CGC- -5'
29181 5' -56 NC_006150.1 + 11262 0.69 0.85077
Target:  5'- aCGACUg-GGuCCuuGGUGGUGGUGCu -3'
miRNA:   3'- -GCUGGagUCuGGugCCACCACUACGc -5'
29181 5' -56 NC_006150.1 + 120749 0.69 0.85077
Target:  5'- uGACaggucgggCAGACgACGGUGGUGGggGUGa -3'
miRNA:   3'- gCUGga------GUCUGgUGCCACCACUa-CGC- -5'
29181 5' -56 NC_006150.1 + 78296 0.7 0.818777
Target:  5'- uGGCCaUCGGAgCuguCGGUGGUGcUGUGg -3'
miRNA:   3'- gCUGG-AGUCUgGu--GCCACCACuACGC- -5'
29181 5' -56 NC_006150.1 + 176190 0.7 0.8018
Target:  5'- uGACUgCGGACCAUGGUGcaGGUGCc -3'
miRNA:   3'- gCUGGaGUCUGGUGCCACcaCUACGc -5'
29181 5' -56 NC_006150.1 + 121965 0.73 0.640852
Target:  5'- -uACC-CGGACCugGGUGGcgUGAUGCc -3'
miRNA:   3'- gcUGGaGUCUGGugCCACC--ACUACGc -5'
29181 5' -56 NC_006150.1 + 92577 1.1 0.004438
Target:  5'- cCGACCUCAGACCACGGUGGUGAUGCGa -3'
miRNA:   3'- -GCUGGAGUCUGGUGCCACCACUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.