miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29182 3' -54.3 NC_006150.1 + 36720 0.66 0.981087
Target:  5'- cCGUUUCUGCCaGaGAUCAgCaAGAGCGGa -3'
miRNA:   3'- -GCGAAGACGGaC-CUGGU-GcUUUCGCU- -5'
29182 3' -54.3 NC_006150.1 + 181291 0.66 0.981087
Target:  5'- gGCggCUGcCCUGGGCgGCGGcgguAGCa- -3'
miRNA:   3'- gCGaaGAC-GGACCUGgUGCUu---UCGcu -5'
29182 3' -54.3 NC_006150.1 + 38230 0.66 0.98088
Target:  5'- gCGCUcuaUCUGCgaGGAcagccuagauuuaCCGCGuuuuGGCGAg -3'
miRNA:   3'- -GCGA---AGACGgaCCU-------------GGUGCuu--UCGCU- -5'
29182 3' -54.3 NC_006150.1 + 62434 0.66 0.980248
Target:  5'- gCGCUUCgaucaaacccacaGCCgauucGGGCCACG--GGCGGg -3'
miRNA:   3'- -GCGAAGa------------CGGa----CCUGGUGCuuUCGCU- -5'
29182 3' -54.3 NC_006150.1 + 64746 0.66 0.978937
Target:  5'- uCGCUgagUUGuuCCUGGAUCAUGGAcauGGUGAu -3'
miRNA:   3'- -GCGAa--GAC--GGACCUGGUGCUU---UCGCU- -5'
29182 3' -54.3 NC_006150.1 + 217619 0.66 0.974103
Target:  5'- uGCaUUUGCCUGcGCCAgCGcAGGGCGGu -3'
miRNA:   3'- gCGaAGACGGACcUGGU-GC-UUUCGCU- -5'
29182 3' -54.3 NC_006150.1 + 219256 0.66 0.972507
Target:  5'- gGCUUCUGCUggcagagcaagagcuUGGGCauCGCGAAcGCGc -3'
miRNA:   3'- gCGAAGACGG---------------ACCUG--GUGCUUuCGCu -5'
29182 3' -54.3 NC_006150.1 + 167963 0.66 0.971404
Target:  5'- uCGCgacgGaCCUGGACgAUGGGAGCGc -3'
miRNA:   3'- -GCGaagaC-GGACCUGgUGCUUUCGCu -5'
29182 3' -54.3 NC_006150.1 + 96938 0.66 0.971404
Target:  5'- aGCcaUCacGCCUGGcACCAuCGAGGGUGAu -3'
miRNA:   3'- gCGa-AGa-CGGACC-UGGU-GCUUUCGCU- -5'
29182 3' -54.3 NC_006150.1 + 120814 0.67 0.966675
Target:  5'- gGCcgUUGUagCUGGGCCGCGAGacgacgccgaugaccAGCGAg -3'
miRNA:   3'- gCGaaGACG--GACCUGGUGCUU---------------UCGCU- -5'
29182 3' -54.3 NC_006150.1 + 171976 0.67 0.962105
Target:  5'- uGCguuccaucugCUGaCCUGGAUCugGggGGCu- -3'
miRNA:   3'- gCGaa--------GAC-GGACCUGGugCuuUCGcu -5'
29182 3' -54.3 NC_006150.1 + 152517 0.67 0.958586
Target:  5'- aCGCggcgCUGaCUUGGAUUugGAuGGCGGu -3'
miRNA:   3'- -GCGaa--GAC-GGACCUGGugCUuUCGCU- -5'
29182 3' -54.3 NC_006150.1 + 183520 0.68 0.932775
Target:  5'- gCGCUgcggauUCUGCgUGGGCUccgguGCGggGuGCGAu -3'
miRNA:   3'- -GCGA------AGACGgACCUGG-----UGCuuU-CGCU- -5'
29182 3' -54.3 NC_006150.1 + 132797 0.68 0.932775
Target:  5'- uCGC-UCUugGCaCUGGGCCACccucuGAAGCGAa -3'
miRNA:   3'- -GCGaAGA--CG-GACCUGGUGc----UUUCGCU- -5'
29182 3' -54.3 NC_006150.1 + 124349 0.69 0.910938
Target:  5'- gGCUUCcGCCUGG--CACGAGAacGCGGu -3'
miRNA:   3'- gCGAAGaCGGACCugGUGCUUU--CGCU- -5'
29182 3' -54.3 NC_006150.1 + 119503 0.69 0.904898
Target:  5'- uCGCUUCUGCCagacgcagccggUGGA-CGCGGAGcGCGu -3'
miRNA:   3'- -GCGAAGACGG------------ACCUgGUGCUUU-CGCu -5'
29182 3' -54.3 NC_006150.1 + 147786 0.69 0.904898
Target:  5'- aCGCUcgUCcggUGCCUGGACgGUGAGGGCa- -3'
miRNA:   3'- -GCGA--AG---ACGGACCUGgUGCUUUCGcu -5'
29182 3' -54.3 NC_006150.1 + 117410 0.71 0.815729
Target:  5'- uCGUgugucacCUGCCUcGGaACCGCGAAGGCGu -3'
miRNA:   3'- -GCGaa-----GACGGA-CC-UGGUGCUUUCGCu -5'
29182 3' -54.3 NC_006150.1 + 92732 1.01 0.020529
Target:  5'- gCGCUUCUGCCUGGACCACG-AAGCGAg -3'
miRNA:   3'- -GCGAAGACGGACCUGGUGCuUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.