miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29182 5' -53.4 NC_006150.1 + 40267 0.66 0.991659
Target:  5'- aUCUgGAUC---CGggCCAGGUGCGGGg -3'
miRNA:   3'- -GGGgCUAGuucGCuaGGUCCAUGCUC- -5'
29182 5' -53.4 NC_006150.1 + 90980 0.66 0.990513
Target:  5'- gUCCCGGUUGAGCGGagacacacCCgAGGcgggGCGAGg -3'
miRNA:   3'- -GGGGCUAGUUCGCUa-------GG-UCCa---UGCUC- -5'
29182 5' -53.4 NC_006150.1 + 182893 0.66 0.990392
Target:  5'- gCCUCGG-CGGGgGcUCCGGGUaguggcaGCGAGg -3'
miRNA:   3'- -GGGGCUaGUUCgCuAGGUCCA-------UGCUC- -5'
29182 5' -53.4 NC_006150.1 + 110666 0.67 0.982822
Target:  5'- gCCUgGAUgGAGUguuaGGUCggCGGGUACGAGg -3'
miRNA:   3'- -GGGgCUAgUUCG----CUAG--GUCCAUGCUC- -5'
29182 5' -53.4 NC_006150.1 + 69932 0.68 0.968275
Target:  5'- gCCCCaGAgcUCGcAGCGGUaCCAGGUACc-- -3'
miRNA:   3'- -GGGG-CU--AGU-UCGCUA-GGUCCAUGcuc -5'
29182 5' -53.4 NC_006150.1 + 119843 0.68 0.968275
Target:  5'- uCCCagGAUCAGuuugauGCGGUCacucuccucucgCAGGUGCGGGg -3'
miRNA:   3'- -GGGg-CUAGUU------CGCUAG------------GUCCAUGCUC- -5'
29182 5' -53.4 NC_006150.1 + 72427 0.68 0.961898
Target:  5'- aCCCCGAUCAAGCGu----GGUugcuCGAu -3'
miRNA:   3'- -GGGGCUAGUUCGCuagguCCAu---GCUc -5'
29182 5' -53.4 NC_006150.1 + 26787 0.68 0.961557
Target:  5'- cCCCCGcgUAAGUGGcUCCAGGcacucccUGCuGAGa -3'
miRNA:   3'- -GGGGCuaGUUCGCU-AGGUCC-------AUG-CUC- -5'
29182 5' -53.4 NC_006150.1 + 88758 0.69 0.942212
Target:  5'- gUCCCGAUCcAGCacugcGUCCAGGgcucguCGGGg -3'
miRNA:   3'- -GGGGCUAGuUCGc----UAGGUCCau----GCUC- -5'
29182 5' -53.4 NC_006150.1 + 215276 0.7 0.927187
Target:  5'- uUCCCGGUCAGGCGuuucgcuAUCCcauAGGgacguggcgGCGAGu -3'
miRNA:   3'- -GGGGCUAGUUCGC-------UAGG---UCCa--------UGCUC- -5'
29182 5' -53.4 NC_006150.1 + 10047 0.71 0.898951
Target:  5'- cCCUCGGUCaAAGauGUCCAGGUGCa-- -3'
miRNA:   3'- -GGGGCUAG-UUCgcUAGGUCCAUGcuc -5'
29182 5' -53.4 NC_006150.1 + 88145 0.72 0.871941
Target:  5'- aCCCCGccgCGGGCugGAUCCugcGGUAUGGGg -3'
miRNA:   3'- -GGGGCua-GUUCG--CUAGGu--CCAUGCUC- -5'
29182 5' -53.4 NC_006150.1 + 139483 0.73 0.833586
Target:  5'- gCuuGaAUCAAGCGugggagagCCGGGUGCGGGa -3'
miRNA:   3'- gGggC-UAGUUCGCua------GGUCCAUGCUC- -5'
29182 5' -53.4 NC_006150.1 + 205495 0.82 0.344654
Target:  5'- gUCCCGAUCAuuaucccuguGCGGUUCAGGUAUGAGc -3'
miRNA:   3'- -GGGGCUAGUu---------CGCUAGGUCCAUGCUC- -5'
29182 5' -53.4 NC_006150.1 + 92699 1.12 0.005823
Target:  5'- cCCCCGAUCAAGCGAUCCAGGUACGAGg -3'
miRNA:   3'- -GGGGCUAGUUCGCUAGGUCCAUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.